Blastomyces gilchristii: BDBG_08243
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Entry
BDBG_08243 CDS
T06540
Name
(RefSeq) small nuclear ribonucleoprotein
KO
K12622
U6 snRNA-associated Sm-like protein LSm3
Organism
bgh
Blastomyces gilchristii
Pathway
bgh03018
RNA degradation
bgh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bgh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
BDBG_08243
09123 Folding, sorting and degradation
03018 RNA degradation
BDBG_08243
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bgh03019
]
BDBG_08243
03041 Spliceosome [BR:
bgh03041
]
BDBG_08243
Messenger RNA biogenesis [BR:
bgh03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
BDBG_08243
mRNA degradation factors
5'-3' decay
Lsm complex
BDBG_08243
Spliceosome [BR:
bgh03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
BDBG_08243
Complex C
U2 snRNP components
BDBG_08243
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
8501691
NCBI-ProteinID:
XP_031580656
LinkDB
All DBs
Position
Unknown
AA seq
98 aa
AA seq
DB search
MADADVGGAAPFSEPLDLVRLSLDEVVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIY
IVEEDESEQEIIKTIKKQEEMLFVRGDSVVLISPQSPS
NT seq
297 nt
NT seq
+upstream
nt +downstream
nt
atggctgacgcagatgtcgggggcgcagctcctttttcggagcccttggaccttgtccgt
ctctcgctcgacgaggtcgtctttgtgaagcttcgtggagatcgagagcttaagggccgc
ttacatgcctacgacagccactgcaatttagtcctaggcgacgtggaagagacaatttac
atcgttgaagaggatgaatccgaacaggaaattatcaagacaatcaagaagcaagaagaa
atgctttttgtaagaggggattccgttgtcctgatttcgcctcaatctccatcatag
DBGET
integrated database retrieval system