KEGG   Blastomyces gilchristii: BDBG_08243
Entry
BDBG_08243        CDS       T06540                                 
Name
(RefSeq) small nuclear ribonucleoprotein
  KO
K12622  U6 snRNA-associated Sm-like protein LSm3
Organism
bgh  Blastomyces gilchristii
Pathway
bgh03018  RNA degradation
bgh03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:bgh00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    BDBG_08243
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BDBG_08243
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bgh03019]
    BDBG_08243
   03041 Spliceosome [BR:bgh03041]
    BDBG_08243
Messenger RNA biogenesis [BR:bgh03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     BDBG_08243
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     BDBG_08243
Spliceosome [BR:bgh03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    BDBG_08243
 Complex C
  U2 snRNP components
    BDBG_08243
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 8501691
NCBI-ProteinID: XP_031580656
LinkDB
Position
Unknown
AA seq 98 aa
MADADVGGAAPFSEPLDLVRLSLDEVVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIY
IVEEDESEQEIIKTIKKQEEMLFVRGDSVVLISPQSPS
NT seq 297 nt   +upstreamnt  +downstreamnt
atggctgacgcagatgtcgggggcgcagctcctttttcggagcccttggaccttgtccgt
ctctcgctcgacgaggtcgtctttgtgaagcttcgtggagatcgagagcttaagggccgc
ttacatgcctacgacagccactgcaatttagtcctaggcgacgtggaagagacaatttac
atcgttgaagaggatgaatccgaacaggaaattatcaagacaatcaagaagcaagaagaa
atgctttttgtaagaggggattccgttgtcctgatttcgcctcaatctccatcatag

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