Brenneria goodwinii: AWC36_00555
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Entry
AWC36_00555 CDS
T05061
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bgj
Brenneria goodwinii
Pathway
bgj03030
DNA replication
bgj03410
Base excision repair
bgj03420
Nucleotide excision repair
bgj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bgj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AWC36_00555 (ligA)
03410 Base excision repair
AWC36_00555 (ligA)
03420 Nucleotide excision repair
AWC36_00555 (ligA)
03430 Mismatch repair
AWC36_00555 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bgj03032
]
AWC36_00555 (ligA)
03400 DNA repair and recombination proteins [BR:
bgj03400
]
AWC36_00555 (ligA)
Enzymes [BR:
bgj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AWC36_00555 (ligA)
DNA replication proteins [BR:
bgj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AWC36_00555 (ligA)
DNA repair and recombination proteins [BR:
bgj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AWC36_00555 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AWC36_00555 (ligA)
MMR (mismatch excision repair)
DNA ligase
AWC36_00555 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AWC36_00555 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
5_3_exonuc
HHH
Motif
Other DBs
NCBI-ProteinID:
ATA22723
UniProt:
A0AAE8JM79
LinkDB
All DBs
Position
123002..125056
Genome browser
AA seq
684 aa
AA seq
DB search
MNPLNIASAEVREATSRIAELRALLRHHEYKYHVEDAPEIPDAEYDRLMRELKNLEETYP
QLVTADSPTQRVGAAPLAAFEQVHHEVPMLSLDNVFDEESYLAFNKRIGDRLKSEEDLTF
CCELKLDGLAVSLLYEDGVLVRAATRGDGTTGENITSNIRTIGAIPLRLVGDNIPRRLEV
RGEVFMKHGGFEKLNEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGWGLL
EGGALPNSHWQRLMQFREWGLPVSDRIKLCTGSQEVLDFYRHIEEVRGSLGFDIDGVVIK
VDDLALQDRLGFVARAPRWAVAFKFPAQEQLTWVRDVEFQVGRTGAITPVARLEPVAVAG
VVVSNATLHNADEIERLGLQIGDRVIVRRAGDVIPQIVGVVESERPQNTRPILFPTACPV
CGSDVERIEGEAVTRCTGGLICGAQRKESLKHFVSRRALDVDGLGDKIIDQLVEKEYVKT
PADLFRLSAGILTGLDRMGPKSAQNLANALEKAKNTTLARFLYALGIRDVGEATAANLAA
HFGSLDALFAADEEALQEVSDVGTVVATHVRHFLEEEHNQQVIRELTDPDGINIHWPAPT
VVKAEEIDSPFAGKTLVLTGSLSILSRDEAKDRLTALGAKVSGSVSKKTDMVIAGEAAGS
KLTKAQELGIPVIDEAEMIRLLGE
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgaatccattgaatatagcgtcagccgaagtacgtgaggcaacctcacggatagcagaa
ttgcgcgccttattgcgccatcatgaatataagtatcacgtggaggatgcgccggaaatt
cccgatgccgagtatgaccggctgatgcgtgagctgaaaaatctggaagagacctacccg
caactggtgacggctgattcgccgacgcagcgggtcggcgccgcgccgcttgcggcgttc
gagcaggttcatcatgaagtgccgatgctgtcgctggataacgtatttgatgaagaaagc
tatctggcatttaataagcgtattggcgatcggttgaaaagcgaagaagacctgaccttc
tgctgtgagttgaagttggacggtctggccgtcagtctgctgtacgaagacggcgtgctg
gtgcgcgcggcgacgcgcggcgacggcactaccggggaaaatattacctccaacattcgc
accatcggcgcgataccgcttcgtttggtcggggataacattccacgccgtctggaagtg
cgcggtgaagttttcatgaagcacggcggcttcgagaaactcaacgaagaagcgcgccgt
accggcggtaaagtttttgctaacccgcggaatgccgcggcgggttcgttgcgccagctc
gatccccgcattacggccaaacgcccgctgactttcttctgttatggctggggcctgttg
gaaggaggcgcgttgccgaatagccattggcagcgcctgatgcaatttagagagtggggt
ttacccgttagcgaccgtattaagctctgcaccggtagtcaggaagtgctggatttttat
cgtcatatcgaagaggtgcgtggctcgctgggttttgatattgatggcgtggtcatcaag
gtagacgatttggccctgcaggatcgtttgggatttgtcgctcgtgcgccgcgttgggcc
gtggcgtttaaatttcccgcgcaggagcaattgacctgggtacgtgatgtcgagtttcag
gtcggccgtaccggcgcgattacgccggtggcgcgtctggagccggtagccgtggcggga
gtcgtggtcagcaatgcgacgttgcataatgccgatgagatcgaacgccttggattacag
atcggcgatcgggtgattgtgcgccgcgctggcgacgtcattccgcagattgtcggcgtg
gtggagtcggaacgtccgcaaaacactcgccccatcctgttccccaccgcctgtccggtt
tgcggttctgatgtggagcgtatcgaaggcgaggcggttacccgctgtaccggcggtctg
atttgcggcgcgcagcgtaaagagtctctgaagcactttgtttcccgccgggcgctggat
gtggatggtttgggcgataagatcatcgatcaactggtggaaaaagagtacgtcaaaacc
ccggccgatcttttccgcctgagcgccgggatattaaccggccttgatcgcatggggccg
aagtcggcgcaaaacctggccaacgcgttggaaaaagcaaaaaataccacgctggcgcga
ttcctatatgcgttggggatccgcgatgtgggggaagcgacggcggccaatctggcggcc
catttcggttcgcttgatgcgctgttcgccgcggatgaagaggcgttacaggaggtttct
gatgtggggacggtggttgctacccacgtgcgtcatttccttgaggaagagcacaatcaa
caggtgatccgcgagttaaccgatcctgacggcatcaatattcactggccagcgccgacg
gtggtcaaagccgaagagatcgacagcccgtttgcgggtaagacgttggtgctgaccggc
tctctgagtatcctgtcccgtgatgaggccaaagatcggctgacggcattgggcgcgaag
gtgagtggcagcgtatcgaagaagaccgatatggtcattgctggcgaagcggccggttcc
aagctgacaaaagcgcaggagttggggatcccggtgattgatgaagctgaaatgattcgt
ttgctgggagagtaa
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