KEGG   Burkholderia glumae BGR1: bglu_1g12650
Entry
bglu_1g12650      CDS       T00905                                 
Name
(GenBank) DNA ligase, NAD-dependent
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
bgl  Burkholderia glumae BGR1
Pathway
bgl03030  DNA replication
bgl03410  Base excision repair
bgl03420  Nucleotide excision repair
bgl03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:bgl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    bglu_1g12650
   03410 Base excision repair
    bglu_1g12650
   03420 Nucleotide excision repair
    bglu_1g12650
   03430 Mismatch repair
    bglu_1g12650
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bgl03032]
    bglu_1g12650
   03400 DNA repair and recombination proteins [BR:bgl03400]
    bglu_1g12650
Enzymes [BR:bgl01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     bglu_1g12650
DNA replication proteins [BR:bgl03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     bglu_1g12650
DNA repair and recombination proteins [BR:bgl03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     bglu_1g12650
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     bglu_1g12650
   MMR (mismatch excision repair)
    DNA ligase
     bglu_1g12650
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      bglu_1g12650
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD Nlig-Ia PTCB-BRCT HHH BRCT_2 MctB Bap31_Bap29_C
Other DBs
NCBI-ProteinID: ACR28424
LinkDB
Position
1:1387024..1389267
AA seq 747 aa
MARTTPADPPASQPSERAAWLRQELERANHAYYVLDQPELLDAEYDRLFRELQQIEAEHP
DFITPDSPTQRVGGEAADGFTPVLHDAPMLSLNNGFTDEDIAAFDKRVADALGKAVDLAG
TAEPVEYACELKFDGLAISLRYVHGKFTQAATRGDGTTGEDVTENVRTIKSIPLTLKGKH
PPALLDVRGEVLMYKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDSKVTAQRPLSFF
AYGIGVLDGAPMPDTHSGLLDWYESLGLPVNRERAVVQGAEGLLDFFRKVGEKREALPYD
IDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEARTRLVAIEVQVGRTGAITPVARL
EPVFVGGATVTNATLHNEDEVRRKDIRVGDTVIVRRAGDVIPEVVGRDGPHAMQVRVRFR
GVRTVARRNRLRAAASSGRPMTWKPRLLKPTDRRGIRVRRGCLRPSLFEFVEQEPFRMPT
ECPVCGSRIERLPDEAIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQLVEQN
LVRTPADLFHLGFATLAALDRFAEKSAQNLLDSLEKARHTTLARFIYALGIRHVGESTAK
DLAKHFGALQPIMDASIDALLEVNDVGPVVAESLHQFFAEEHNRTVIAQLREKVDWPEGP
PAPREPQGVLAGKTVVLTGTLPTLSRDEAKALLEAAGAKVTGSVSKKTDYVVAGAEAGSK
LAKAEELGIPVLDEDGMHQLLKGESPS
NT seq 2244 nt   +upstreamnt  +downstreamnt
atggcccgaaccaccccagccgacccccccgccagccagccgtccgagcgcgcggcgtgg
ctgcgccaggaactcgagcgcgccaaccacgcgtattacgtgctcgaccagcccgaactg
ctcgatgccgagtacgaccggctgtttcgcgaactgcagcagatcgaggccgagcacccc
gacttcatcactcccgattcgccgacccagcgcgtgggcggcgaggccgccgacggcttc
acgccggtgctccacgacgcgccgatgctctcgctcaacaacggcttcaccgacgaggac
atcgccgcgttcgacaagcgggtggccgacgcgctcggcaaggcggtcgatctggccggc
accgccgagccggtcgaatacgcctgcgagctgaaattcgacgggctcgcgatctcgctg
cgctacgtgcatggcaagttcacgcaggccgccacgcgcggcgacggcaccaccggcgaa
gacgtgaccgagaacgtgcgcaccatcaagtcgattccgctgacgctgaagggcaagcat
ccgcccgcgctgctcgacgtgcgcggcgaggtgctgatgtacaagcgcgatttcgcgcgc
ctcaacgagcgccagcgcgcggccgagcagcgcgagttcgccaacccgcgcaacgcggcg
gccggcagcctgcgccagctcgattcgaaggtcaccgcgcagcgcccgctgtcgttcttc
gcctatggcatcggcgtgctcgacggcgcgccgatgcccgacacgcacagcggcctgctc
gactggtacgagtcgctcggcctgccggtcaatcgcgagcgcgccgtggtgcagggcgcc
gaagggctgctcgacttcttccgcaaggtcggcgagaagcgcgaggcgctgccctacgac
atcgacggggtggtctacaaggtcaaccggcgcgacgagcaggaccggctcggcttcgtc
tcgcgcgcgccgcgcttcgcgctcgcgcacaagttcccggcccaggaggcgcgcacgagg
ctcgtcgcgatcgaggtgcaggtgggccgcaccggcgcgatcacgccggtcgcgcggctc
gagccggtgttcgtgggcggcgcgaccgtcaccaacgcgacgctgcacaacgaggacgaa
gtgcgccgcaaggacatccgggtcggcgacacggtgatcgtgcggcgcgccggcgacgtg
attcccgaggtggtcggccgggacggcccgcacgcgatgcaggtgcgggtccggtttcgc
ggggtgcggacggtcgcgcggcgcaaccggctgcgcgcggccgcctcgtcgggccggccg
atgacctggaagccgcggctgctgaagccgacggatcgccgcggcatccgggtgcggcgg
ggatgcctgcggccgagcctgttcgagttcgtcgagcaggaaccgttcaggatgccgacc
gaatgccccgtgtgcggctcgaggatcgagcgcctgcccgacgaggcgatcgcgcgctgc
acgggcgggctgttctgccccgcgcagcgcaagcaggcgctctggcatttcgcgcagcgc
cgcgcgctcgacatcgacgggctaggcgagaagatcatcgaccaattggtcgagcagaac
ctcgtgcgcaccccggccgacctgttccatctcggcttcgcgacgctcgccgcgctcgac
cgcttcgccgagaagtccgcgcagaacctgctcgattcactcgagaaggcgcgccacacc
acgctcgcgcgcttcatctacgcgctcggcatccgccacgtcggcgaatcgaccgcgaag
gacctggccaagcacttcggcgcgctgcagccgatcatggatgcctcgatcgacgctctg
ctcgaagtcaacgacgtcggcccggtggtggccgaatcgctgcatcagttctttgccgag
gaacacaaccgcaccgtgatcgcgcagctgcgcgagaaggtggactggcccgaggggccg
cccgcgccgcgcgagccgcagggcgtgctggccggcaagaccgtggtgctgacgggcacg
ctgcccacgctctcgcgcgacgaagcgaaggcgctgctcgaggcggccggcgcgaaggtg
acgggttcggtctcgaagaagaccgactacgtggtggccggcgcggaggcgggcagcaag
ctcgcgaaggccgaggaactcggcatcccggtgctcgacgaggacgggatgcatcaactg
ctgaaaggggaatcaccgtcatga

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