KEGG   PATHWAY: bgm02010
Entry
bgm02010                    Pathway                                
Name
ABC transporters - Bordetella genomosp. 13
Description
The ATP-binding cassette (ABC) transporters form one of the largest known protein families, and are widespread in bacteria, archaea, and eukaryotes. They couple ATP hydrolysis to active transport of a wide variety of substrates such as ions, sugars, lipids, sterols, peptides, proteins, and drugs. The structure of a prokaryotic ABC transporter usually consists of three components; typically two integral membrane proteins each having six transmembrane segments, two peripheral proteins that bind and hydrolyze ATP, and a periplasmic (or lipoprotein) substrate-binding protein. Many of the genes for the three components form operons as in fact observed in many bacterial and archaeal genomes. On the other hand, in a typical eukaryotic ABC transporter, the membrane spanning protein and the ATP-binding protein are fused, forming a multi-domain protein with the membrane-spanning domain (MSD) and the nucleotide-binding domain (NBD).
Class
Environmental Information Processing; Membrane transport
Pathway map
bgm02010  ABC transporters
bgm02010

Other DBs
GO: 0043190 0043191 0043192
TC: 3.A.1
Organism
Bordetella genomosp. 13 [GN:bgm]
Gene
CAL15_00245  [KO:K23536]
CAL15_00250  [KO:K23535]
CAL15_00255  [KO:K23537]
CAL15_00260  [KO:K07335]
CAL15_00340  [KO:K05816] [EC:7.6.2.10]
CAL15_00345  [KO:K05813]
CAL15_00350  [KO:K05814]
CAL15_00355  [KO:K05815]
CAL15_00475  [KO:K01999]
CAL15_00615  [KO:K15553]
CAL15_00620  [KO:K15555] [EC:7.6.2.14]
CAL15_00625  [KO:K15554]
CAL15_00945  [KO:K07323]
CAL15_00955  [KO:K02067]
CAL15_00960  [KO:K02066]
CAL15_00965  [KO:K02065]
CAL15_01395  [KO:K05773]
CAL15_01400  [KO:K06857] [EC:7.3.2.6]
CAL15_01405  [KO:K05772]
CAL15_02420  [KO:K02073]
CAL15_02490  [KO:K06861] [EC:7.5.2.5]
CAL15_02540  [KO:K16013]
CAL15_02545  [KO:K16012]
CAL15_03540  [KO:K16014]
CAL15_03590  [KO:K01999]
CAL15_03595  [KO:K01997]
CAL15_03600  [KO:K01998]
CAL15_03605  [KO:K01995]
CAL15_03610  [KO:K01996]
CAL15_04270  [KO:K02073]
CAL15_04280  [KO:K02072]
CAL15_04285  [KO:K02071]
CAL15_04290  [KO:K02073]
CAL15_04295  [KO:K02073]
CAL15_04300  ssuB; aliphatic sulfonate ABC transporter ATP-binding protein [KO:K15555] [EC:7.6.2.14]
CAL15_04305  ssuC; alkanesulfonate transporter permease subunit [KO:K15554]
CAL15_04310  [KO:K15553]
CAL15_04955  [KO:K01996]
CAL15_04960  [KO:K01995 K01998]
CAL15_04965  [KO:K01997]
CAL15_04970  [KO:K01999]
CAL15_05490  [KO:K11959]
CAL15_05495  [KO:K11960]
CAL15_05500  [KO:K11961]
CAL15_05505  [KO:K11962]
CAL15_05510  [KO:K11963]
CAL15_05705  [KO:K11963]
CAL15_05710  [KO:K11962]
CAL15_05715  [KO:K11961]
CAL15_05720  [KO:K11960]
CAL15_05725  [KO:K11959]
CAL15_06000  [KO:K15576]
CAL15_06005  [KO:K15577]
CAL15_06010  [KO:K15578] [EC:7.3.2.4]
CAL15_06170  [KO:K06160]
CAL15_06415  [KO:K02010] [EC:7.2.2.7]
CAL15_06420  [KO:K02011]
CAL15_06425  [KO:K02012]
CAL15_06505  [KO:K09688]
CAL15_06510  [KO:K09689] [EC:7.6.2.12]
CAL15_06515  [KO:K10107]
CAL15_06595  [KO:K01999]
CAL15_06625  ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC [KO:K05816] [EC:7.6.2.10]
CAL15_06630  [KO:K05815]
CAL15_06635  [KO:K05814]
CAL15_06640  [KO:K05813]
CAL15_06660  [KO:K01999]
CAL15_06665  [KO:K01997]
CAL15_06670  livM; high-affinity branched-chain amino acid ABC transporter permease LivM [KO:K01998]
CAL15_06675  livG; high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG [KO:K01995]
CAL15_06680  livF; branched-chain amino acid ABC transporter ATP-binding protein [KO:K01996]
CAL15_06725  [KO:K02073]
CAL15_07175  [KO:K17324]
CAL15_07180  [KO:K17325]
CAL15_07185  [KO:K17322]
CAL15_07190  [KO:K17323]
CAL15_07200  [KO:K17321]
CAL15_08310  [KO:K02424]
CAL15_08315  [KO:K10009]
CAL15_08320  [KO:K10010] [EC:7.4.2.1]
CAL15_08700  [KO:K01999]
CAL15_08705  [KO:K01997]
CAL15_08710  [KO:K01998]
CAL15_08715  [KO:K01995]
CAL15_08720  [KO:K01996]
CAL15_09305  [KO:K09810] [EC:7.6.2.-]
CAL15_09310  [KO:K09808]
CAL15_09315  [KO:K09808]
CAL15_09365  [KO:K01996]
CAL15_09370  [KO:K01999]
CAL15_09375  [KO:K01998]
CAL15_09380  [KO:K01997]
CAL15_09385  [KO:K01995]
CAL15_09650  [KO:K01999]
CAL15_10980  [KO:K02000] [EC:7.6.2.9]
CAL15_10985  [KO:K02001]
CAL15_10990  [KO:K02002]
CAL15_11015  [KO:K01999]
CAL15_11120  [KO:K11085] [EC:7.5.2.6]
CAL15_11500  [KO:K01996]
CAL15_11505  [KO:K01995]
CAL15_11510  [KO:K01997 K01998]
CAL15_11515  [KO:K01999]
CAL15_12000  [KO:K01997]
CAL15_12005  [KO:K01998]
CAL15_12010  [KO:K01995]
CAL15_12015  [KO:K01996]
CAL15_12035  [KO:K01999]
CAL15_12225  [KO:K01995 K01996 K01998]
CAL15_12230  [KO:K01997]
CAL15_12235  [KO:K01999]
CAL15_12395  [KO:K15576]
CAL15_12400  [KO:K15577]
CAL15_12405  [KO:K15578] [EC:7.3.2.4]
CAL15_12745  [KO:K03523]
CAL15_12840  [KO:K10547]
CAL15_12845  [KO:K10548] [EC:7.5.2.-]
CAL15_12850  [KO:K10546]
CAL15_12870  [KO:K01999]
CAL15_12875  [KO:K01997]
CAL15_12880  [KO:K01998]
CAL15_12885  [KO:K01995]
CAL15_12890  [KO:K01996]
CAL15_12920  [KO:K01999]
CAL15_12925  livF; branched-chain amino acid ABC transporter ATP-binding protein [KO:K01996]
CAL15_12930  [KO:K01995 K01998]
CAL15_12935  [KO:K01997]
CAL15_13285  [KO:K15553]
CAL15_13300  [KO:K02044]
CAL15_13305  [KO:K02041] [EC:7.3.2.2]
CAL15_13310  [KO:K02042]
CAL15_13330  [KO:K02036] [EC:7.3.2.1]
CAL15_13335  [KO:K02038]
CAL15_13340  [KO:K02037]
CAL15_13345  [KO:K02040]
CAL15_13470  [KO:K15554]
CAL15_13475  [KO:K15555] [EC:7.6.2.14]
CAL15_13480  [KO:K15553]
CAL15_13575  [KO:K09969]
CAL15_13830  glnQ; glutamine ABC transporter ATP-binding protein [KO:K10038] [EC:7.4.2.1]
CAL15_13835  glnP; glutamine ABC transporter permease GlnP [KO:K10037]
CAL15_13840  [KO:K10036]
CAL15_14360  [KO:K24821]
CAL15_14550  [KO:K01996]
CAL15_14555  [KO:K01995]
CAL15_14560  [KO:K01998]
CAL15_14565  [KO:K01997]
CAL15_14570  [KO:K01999]
CAL15_15245  [KO:K02012]
CAL15_15255  [KO:K02011]
CAL15_15260  [KO:K02010] [EC:7.2.2.7]
CAL15_15630  [KO:K11074]
CAL15_15635  [KO:K11075]
CAL15_15640  [KO:K11076] [EC:7.6.2.16]
CAL15_15645  [KO:K11073]
CAL15_15775  [KO:K02045] [EC:7.3.2.3]
CAL15_15780  [KO:K02047]
CAL15_15785  [KO:K02046]
CAL15_15790  [KO:K23163]
CAL15_16050  [KO:K02018]
CAL15_16055  [KO:K02020]
CAL15_16060  [KO:K02017] [EC:7.3.2.5]
CAL15_16485  [KO:K13891]
CAL15_16490  [KO:K13890]
CAL15_16495  [KO:K13889]
CAL15_16500  [KO:K13892]
CAL15_16670  [KO:K01999]
CAL15_16680  [KO:K07091]
CAL15_16960  [KO:K01995]
CAL15_16965  [KO:K01996]
CAL15_16970  [KO:K01999]
CAL15_16975  [KO:K01997]
CAL15_16980  [KO:K01998]
CAL15_16985  [KO:K02002]
CAL15_16990  [KO:K01996]
CAL15_16995  [KO:K01995 K01998]
CAL15_17000  [KO:K01997]
CAL15_17005  [KO:K01999]
CAL15_17945  [KO:K02042]
CAL15_17950  [KO:K02042]
CAL15_17955  [KO:K02041] [EC:7.3.2.2]
CAL15_17960  [KO:K02044]
CAL15_19190  [KO:K05685] [EC:7.6.2.-]
CAL15_19680  [KO:K10107]
CAL15_19685  [KO:K09689] [EC:7.6.2.12]
CAL15_19690  [KO:K09688]
CAL15_19835  [KO:K02073]
CAL15_19840  [KO:K02072]
CAL15_19845  [KO:K02071]
CAL15_21010  [KO:K11720]
CAL15_21150  [KO:K01996]
CAL15_21155  [KO:K01995]
CAL15_21160  [KO:K01998]
CAL15_21165  [KO:K01997]
CAL15_21170  [KO:K01999]
CAL15_21300  [KO:K09972] [EC:7.4.2.1]
CAL15_21305  [KO:K09971]
CAL15_21310  [KO:K09970]
CAL15_21315  [KO:K09969]
CAL15_21320  [KO:K09812]
CAL15_21325  [KO:K09811]
CAL15_22520  [KO:K09969]
CAL15_22560  [KO:K01995]
CAL15_22565  [KO:K01997]
CAL15_22570  [KO:K01998]
CAL15_22575  [KO:K01999]
CAL15_22580  [KO:K01996]
CAL15_22910  [KO:K02067]
CAL15_22915  [KO:K02065]
CAL15_22920  [KO:K02066]
CAL15_22975  [KO:K09691] [EC:7.5.2.14]
CAL15_22980  [KO:K09690]
CAL15_23555  [KO:K01999]
CAL15_23560  [KO:K01995]
CAL15_23565  [KO:K01996]
CAL15_23570  [KO:K01997]
CAL15_23575  [KO:K01998]
CAL15_24205  [KO:K15553]
CAL15_24210  [KO:K15555] [EC:7.6.2.14]
CAL15_24215  [KO:K15554]
Compound
C00009  Orthophosphate
C00025  L-Glutamate
C00031  D-Glucose
C00032  Heme
C00034  Manganese
C00037  Glycine
C00038  Zinc cation
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00070  Copper
C00077  L-Ornithine
C00079  L-Phenylalanine
C00086  Urea
C00088  Nitrite
C00089  Sucrose
C00093  sn-Glycerol 3-phosphate
C00095  D-Fructose
C00098  Oligopeptide
C00107  Dipeptide
C00114  Choline
C00116  Glycerol
C00120  Biotin
C00121  D-Ribose
C00123  L-Leucine
C00134  Putrescine
C00135  L-Histidine
C00137  myo-Inositol
C00140  N-Acetyl-D-glucosamine
C00148  L-Proline
C00151  L-Amino acid
C00159  D-Mannose
C00175  Cobalt ion
C00181  D-Xylose
C00183  L-Valine
C00185  Cellobiose
C00188  L-Threonine
C00208  Maltose
C00212  Adenosine
C00243  Lactose
C00244  Nitrate
C00245  Taurine
C00255  Riboflavin
C00259  L-Arabinose
C00288  HCO3-
C00291  Nickel
C00294  Inosine
C00299  Uridine
C00315  Spermidine
C00320  Thiosulfate
C00330  Deoxyguanosine
C00333  D-Galacturonate
C00338  Lipopolysaccharide
C00378  Thiamine
C00379  Xylitol
C00387  Guanosine
C00392  Mannitol
C00407  L-Isoleucine
C00430  5-Aminolevulinate
C00470  Pectate
C00475  Cytidine
C00487  Carnitine
C00491  L-Cystine
C00492  Raffinose
C00503  Erythritol
C00526  Deoxyuridine
C00559  Deoxyadenosine
C00719  Betaine
C00794  D-Sorbitol
C00855  D-Methionine
C00865  Phospholipid
C00881  Deoxycytidine
C00919  Choline sulfate
C00973  Cyclomaltodextrin
C01083  alpha,alpha-Trehalose
C01153  Orthophosphoric monoester
C01157  Hydroxyproline
C01177  Inositol 1-phosphate
C01181  4-Trimethylammoniobutanoate
C01279  4-Amino-5-hydroxymethyl-2-methylpyrimidine
C01330  Sodium cation
C01417  Cyanate
C01487  D-Allose
C01606  Phthalate
C01630  Xylobiose
C01667  Bacitracin
C01674  Chitobiose
C01682  Nopaline
C01684  D-Rhamnose
C01762  Xanthosine
C01834  Lipoprotein
C01835  Maltotriose
C01935  Maltodextrin
C01946  Oleandomycin
C02160  Isomaltotriose
C02273  Digalacturonate
C03557  2-Aminoethylphosphonate
C03611  Galactose oligosaccharide
C03619  Methyl beta-D-galactoside
C04114  (E)-4-(Trimethylammonio)but-2-enoate
C04137  Octopine
C05349  Ciprofloxacin
C05402  Melibiose
C05512  Deoxyinosine
C05776  Vitamin B12
C06227  Fe(III)hydroxamate
C06229  Fe(III)dicitrate
C06230  Fe-enterobactin
C06232  Molybdate
C06687  Norfloxacin
C06705  Capsular polysaccharide
C06706  Lipo-oligosaccharide
C06707  Teichoic acid
C06767  Hemine
C07662  Sparfloxacin
C07663  Moxifloxacin
C11612  Polymyxin B
C13768  Colistin sulfate
C14818  Fe2+
C14819  Fe3+
C15521  Alkanesulfonate
C15719  Coelichelin
C16421  AI-2
C16692  Mannopine
C19609  Nickel(2+)
C19872  N-Formyl-4-amino-5-aminomethyl-2-methylpyrimidine
C20570  alpha-1,5-L-Arabinobiose
C20571  alpha-1,5-L-Arabinotriose
C20572  alpha-1,5-L-Arabinotetraose
C20573  Aldotetraouronic acid
C20679  Tungstate
C21066  D-Galactofuranose
C22040  S-Methyl-L-cysteine
G00457  Maltotetraose
Reference
PMID:9799792
  Authors
Tomii K, Kanehisa M.
  Title
A comparative analysis of ABC transporters in complete microbial genomes.
  Journal
Genome Res 8:1048-59 (1998)
DOI:10.1101/gr.8.10.1048
Reference
  Authors
Sperandeo P, Lau FK, Carpentieri A, De Castro C, Molinaro A, Deho G, Silhavy TJ, Polissi A
  Title
Functional analysis of the protein machinery required for transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
J Bacteriol 190:4460-9 (2008)
DOI:10.1128/JB.00270-08
Reference
  Authors
Ruiz N, Gronenberg LS, Kahne D, Silhavy TJ
  Title
Identification of two inner-membrane proteins required for the transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
Proc Natl Acad Sci U S A 105:5537-42 (2008)
DOI:10.1073/pnas.0801196105
Reference
  Authors
Omata T, Price GD, Badger MR, Okamura M, Gohta S, Ogawa T
  Title
Identification of an ATP-binding cassette transporter involved in bicarbonate uptake in the cyanobacterium Synechococcus sp. strain PCC 7942.
  Journal
Proc Natl Acad Sci U S A 96:13571-6 (1999)
DOI:10.1073/pnas.96.23.13571
Reference
  Authors
Quintero MJ, Montesinos ML, Herrero A, Flores E
  Title
Identification of genes encoding amino acid permeases by inactivation of selected ORFs from the Synechocystis genomic sequence.
  Journal
Genome Res 11:2034-40 (2001)
DOI:10.1101/gr.196301
Reference
  Authors
Picossi S, Montesinos ML, Pernil R, Lichtle C, Herrero A, Flores E
  Title
ABC-type neutral amino acid permease N-I is required for optimal diazotrophic growth and is repressed in the heterocysts of Anabaena sp. strain PCC 7120.
  Journal
Mol Microbiol 57:1582-92 (2005)
DOI:10.1111/j.1365-2958.2005.04791.x
Reference
  Authors
Valladares A, Montesinos ML, Herrero A, Flores E.
  Title
An ABC-type, high-affinity urea permease identified in cyanobacteria.
  Journal
Mol Microbiol 43:703-15 (2002)
DOI:10.1046/j.1365-2958.2002.02778.x
Reference
  Authors
Richard-Fogal CL, Frawley ER, Kranz RG
  Title
Topology and function of CcmD in cytochrome c maturation.
  Journal
J Bacteriol 190:3489-93 (2008)
DOI:10.1128/JB.00146-08
Reference
  Authors
Suzuki H, Koyanagi T, Izuka S, Onishi A, Kumagai H
  Title
The yliA, -B, -C, and -D genes of Escherichia coli K-12 encode a novel glutathione importer with an ATP-binding cassette.
  Journal
J Bacteriol 187:5861-7 (2005)
DOI:10.1128/JB.187.17.5861-5867.2005
Reference
  Authors
Novikova M, Metlitskaya A, Datsenko K, Kazakov T, Kazakov A, Wanner B, Severinov K
  Title
The Escherichia coli Yej transporter is required for the uptake of translation inhibitor microcin C.
  Journal
J Bacteriol 189:8361-5 (2007)
DOI:10.1128/JB.01028-07
Reference
  Authors
Tikhonova EB, Devroy VK, Lau SY, Zgurskaya HI
  Title
Reconstitution of the Escherichia coli macrolide transporter: the periplasmic membrane fusion protein MacA stimulates the ATPase activity of MacB.
  Journal
Mol Microbiol 63:895-910 (2007)
DOI:10.1111/j.1365-2958.2006.05549.x
Reference
  Authors
Yamanaka H, Kobayashi H, Takahashi E, Okamoto K
  Title
MacAB is involved in the secretion of Escherichia coli heat-stable enterotoxin II.
  Journal
J Bacteriol 190:7693-8 (2008)
DOI:10.1128/JB.00853-08
KO pathway
ko02010   

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