Burkholderia gladioli ATCC 10248: BM43_3860
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Entry
BM43_3860 CDS
T03826
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bgo
Burkholderia gladioli ATCC 10248
Pathway
bgo03030
DNA replication
bgo03410
Base excision repair
bgo03420
Nucleotide excision repair
bgo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bgo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BM43_3860 (ligA)
03410 Base excision repair
BM43_3860 (ligA)
03420 Nucleotide excision repair
BM43_3860 (ligA)
03430 Mismatch repair
BM43_3860 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bgo03032
]
BM43_3860 (ligA)
03400 DNA repair and recombination proteins [BR:
bgo03400
]
BM43_3860 (ligA)
Enzymes [BR:
bgo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BM43_3860 (ligA)
DNA replication proteins [BR:
bgo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BM43_3860 (ligA)
DNA repair and recombination proteins [BR:
bgo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BM43_3860 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BM43_3860 (ligA)
MMR (mismatch excision repair)
DNA ligase
BM43_3860 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BM43_3860 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
AJW98799
UniProt:
A0AAW3EWK6
LinkDB
All DBs
Position
1:complement(4312612..4314687)
Genome browser
AA seq
691 aa
AA seq
DB search
MARSPVEPPASQPSERAAWLRNELERANHAYYVLDQPDLPDAEYDRLFRELQQIEAEHPD
LITLDSPTQRVGGEAATGFTPVVHDAPMLSLNNGFSDEDIAAFDKRVADALDKAPADLAG
TATDPVEYACELKFDGLAISLRYEHGRFVQAATRGDGTTGEDVTENVRTIRSIPLTLKGK
NPPALLDVRGEVLMYKRDFARLNQRQREAEQREFANPRNAAAGSLRQLDSKITAQRPLSF
FAYGIGVLEGAAMPDTHSGLLDWYAGFGLPVNRERAVVKGAEGLLAFFHKVGERREALPY
DIDGVVYKVNRRDEQERLGFVSRAPRFALAHKFPAQEALTRLLAIEVQVGRTGAITPVAR
LEPVFVGGATVTNATLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVSSLLDRRPADAAEF
VMPTECPVCGSRIERLPEEAIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQL
VEQNLVRTPADLFHLGFATLAALDRFADKSAQNLLDSLEKARHTTLGRFIYALGIRHVGE
STAKDLAKHFGSLQPIMDATTEQLLEVNDVGPVVAESLHQFFAEEHNRTVIAQLREKVDW
PEGPPAPREPQGVLAGKTVVLTGTLPTLGRDEAKALLEAAGAKVTGSVSKKTDYVVAGAE
AGSKLAKAEELGIPVLDEDGMHLLLKGELPS
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atggcccgatccccagttgaaccgccagccagccagccgtccgaacgggcggcctggctg
cgcaatgaactcgagcgcgcgaatcacgcctattacgtgctcgaccagcccgacctgccc
gacgccgaatacgaccggctgttccgcgagctgcagcaaatcgaggccgagcatcccgac
ctgatcacgctcgactcgccgacccagcgcgtgggtggcgaggccgccaccggcttcacg
ccggtggtgcacgacgcgccgatgctgtcgctgaacaatggtttctccgacgaggacatc
gccgccttcgacaagcgtgtggccgatgcgctcgacaaggcgccggccgacctggccggc
accgccaccgatccggtcgaatacgcctgcgagctcaagttcgacggcctggcgatctcg
ctgcgctacgaacatggccgcttcgtgcaggccgccacgcgcggcgacggcaccaccggc
gaggacgtcaccgagaacgtgcgcaccatccgctcgatcccgctgacgctgaagggcaag
aacccgccggccctgctcgacgtgcgcggcgaggtgctgatgtacaagcgcgatttcgcg
cgcctgaaccagcgccagcgcgaggccgagcagcgcgagttcgccaatccgcgcaacgcg
gcggccggcagcctgcgccagctcgattcgaagatcactgcgcagcggccgctgtccttc
ttcgcctacggcatcggcgtgctcgaaggcgcggccatgcccgatacgcacagcggcctg
ctcgactggtacgccggcttcgggctgccggtcaatcgcgagcgcgcggtggtgaagggc
gccgaggggctgctggccttcttccacaaggtcggcgagcggcgcgaggcgctgccctac
gacatcgacggcgtggtctacaaggtcaaccggcgcgacgagcaggagcggctcggtttc
gtctcgcgcgcgccgcgcttcgcgctggcccacaagttcccggcccaggaggcgctcacc
cggctgctggcgatcgaggtgcaggtcggccgcaccggcgcgatcaccccggtggcgcgg
ctcgagccggtgttcgtgggcggcgcgacggtgaccaacgcgaccctgcacaacgaggac
gaggtgcgccgcaaggacatccggatcggcgacacggtgatcgtgcggcgcgccggagac
gtgattcccgaggtggtgtcgtccctgctcgaccggcgcccggccgacgcggccgaattc
gtgatgccgaccgaatgcccggtctgcggctcgcgcatcgagcggctgcccgaggaggcg
atcgcgcgctgcacgggcggcctgttctgcccggcgcagcgcaagcaggcgctgtggcac
ttcgcgcagcgccgcgcgctcgacatcgacggcctcggcgagaagatcatcgaccagttg
gtcgagcagaacctggtgcgcacgccggccgacctgttccatctcggtttcgcgaccctg
gcggcgctcgaccgcttcgccgacaagtccgcgcaaaacctgctcgactcgctggagaag
gcgcgtcacaccacgctcggccgcttcatctacgcgctggggatccgccacgtcggcgaa
tcgacggccaaggacctggccaagcacttcggctcgctgcagccgatcatggacgccacc
accgagcaactgctcgaagtcaacgacgtcggcccggtggtggccgagtcgctgcaccag
ttcttcgccgaggagcacaatcgcaccgtgatcgcgcaactgcgcgagaaggtcgactgg
ccggaagggccgcccgcgccgcgcgagccgcagggcgtgctggccggcaagaccgtggtg
ctgacgggcacgctgccgacgctgggccgcgacgaggcgaaggcgctgctcgaggcggcc
ggcgccaaggtgaccggctcggtgtcgaagaagaccgattacgtggtcgccggtgccgag
gcggggagcaagctcgccaaggccgaggaactcggcatccccgtgctcgacgaggacggg
atgcatctactgctcaagggagaactgccatcatga
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