Bythopirellula goksoeyrii: Pr1d_14190
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Entry
Pr1d_14190 CDS
T09914
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bgok
Bythopirellula goksoeyrii
Pathway
bgok03030
DNA replication
bgok03410
Base excision repair
bgok03420
Nucleotide excision repair
bgok03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bgok00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Pr1d_14190 (ligA)
03410 Base excision repair
Pr1d_14190 (ligA)
03420 Nucleotide excision repair
Pr1d_14190 (ligA)
03430 Mismatch repair
Pr1d_14190 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bgok03032
]
Pr1d_14190 (ligA)
03400 DNA repair and recombination proteins [BR:
bgok03400
]
Pr1d_14190 (ligA)
Enzymes [BR:
bgok01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Pr1d_14190 (ligA)
DNA replication proteins [BR:
bgok03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Pr1d_14190 (ligA)
DNA repair and recombination proteins [BR:
bgok03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Pr1d_14190 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Pr1d_14190 (ligA)
MMR (mismatch excision repair)
DNA ligase
Pr1d_14190 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Pr1d_14190 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
Nlig-Ia
BRCT_2
RNA_pol_A_CTD
Fur_reg_FbpA
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QEG34146
UniProt:
A0A5B9QB59
LinkDB
All DBs
Position
1699428..1701443
Genome browser
AA seq
671 aa
AA seq
DB search
MSKAHVESEIESLREEIRGHDARYYGEAAPTITDLEYDRLMDRLKELEAAHPALVTPDSP
TQRVGGAPVDELNSVRHLVPMMSIDNTYSLEELRRYGERTAKLLPDESIEWVVELKIDGV
AMSLIYEQGQLTRGVTRGDGTTGDDVTHNVRTVLGVPLRLAGDGFPPLVEVRGEIYMTNA
DLVRLNEKRQEQGLEAYSNTRNVTAGSIRLLDPRICAERRLRLFCHGVGQVEGLHATTHM
EFLKQLGDWGLPATPHVECFPDFEAAITHCEGLIERLHELDFEVDGLVLKVNRFDQRGRL
GATSKSPRWLIAYKFEKYEAVTRLNEIRVQVGKTGTITPVAELEPVELADTTVSRASLHN
ADEIARKDVREGDTVVVEKAGKIIPHILRVETHLRPEGTKPFLFPTHCPECESELVKDEG
GVYIRCPNLACPAQLRERLQYFASRTAMDIEGLGEKLIDQLVSTGLVKRFADLYDLTVEQ
LAQLERMGQKSAQNVVDAIRESKSRSFARLLNGLTIRHVGTRVASILAEQFQTMSALQAA
TIEQLSQVEEVGPIIAESVYSFLHNENGIETINGLEEAGVSMGMVKEQTTAPQHQPFAGK
SFVVTGKLENYTRDEIQLLIEQYGGRATSSVSASTDYLVAGEKAGSKLAKAQELGVAVLT
EEEFHALCAGE
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaggcgcacgtcgaatctgagattgaatcactccgcgaggagattcgcggccat
gatgcgcgatactacggggaggccgcgccgacgatcacggacctcgagtacgatcggctc
atggatcggctcaaggaacttgaagccgcacatcctgctctggtgacgccggatagtccc
acgcaacgagtaggtggagcgccggtcgacgaattgaactcggtgcggcatctggtgccg
atgatgtcgatcgacaacacctacagccttgaggaacttcgtaggtatggcgagcggacg
gcgaagttgctgccggatgagagcatcgagtgggtcgtggaactcaagattgatggcgtg
gccatgtcactcatctacgaacaaggacaactcactcgtggcgtcacacggggtgacggc
accactggcgacgatgtcactcacaatgtccgtaccgtgctgggggtccctctgcggctt
gctggcgacgggtttccgccgctggtcgaagttcgtggtgagatctacatgaccaatgcg
gatctggtgagactcaacgagaagcgtcaggagcaggggctcgaagcttactcaaacaca
cggaatgttacggctggaagtatacgcctgctagatccacgaatctgtgccgagaggcga
ctgcgactcttttgccacggtgtgggccaagtcgaaggtcttcatgcgacgacacacatg
gagtttctcaaacagcttggtgattgggggttgccggcaacaccgcacgtcgaatgtttt
cctgactttgaggcagcgatcacacattgcgaggggcttatcgaacgacttcacgaactc
gatttcgaagtcgacggactcgtgttgaaagtgaatcggttcgatcaacgcgggcggttg
ggtgccaccagcaagagcccccgctggctgatcgcttacaagtttgagaaatacgaggcc
gtaacgcggctcaatgaaatccgcgtccaagttggcaagacgggcaccatcactccggtg
gcggaactggagccggtggaactcgctgacacgacagtaagtcgagccagcctgcacaat
gccgacgagatcgcccggaaagacgtgcgcgagggcgatacggttgtggttgagaaggcg
gggaagattattccgcatattttacgggttgagactcacttgaggcctgaagggacaaag
ccatttctttttccgacacactgtcccgagtgcgagagtgaattggtgaaagacgagggg
ggcgtctatattcgttgtccaaacctcgcctgtcccgctcagctgcgcgaacggttgcaa
tattttgcgagtcgaaccgcgatggatatcgagggactaggcgaaaagctgattgaccaa
cttgtctcgacgggactggtgaagcgttttgcagatttgtacgatttgaccgttgaacaa
ctcgcccagctcgaacggatggggcagaagtcagctcagaatgtggtggacgcgattcga
gaaagtaagtcacgctcatttgccaggctgttgaacgggttgacgatccgccacgtcgga
acccgtgtagcatccattcttgctgagcaatttcagacgatgtctgcattgcaggcggcg
actatcgaacaattaagccaagtagaagaggtcggtccgatcatcgctgagagcgtctac
agttttctacacaacgaaaacggaatcgaaacgatcaacggcttggaagaggctggcgtt
agtatggggatggtaaaagagcagaccactgccccacagcatcagccgtttgccggaaag
tcgtttgtcgtcactgggaagttagaaaactatactcgtgatgagatccaattgctgata
gagcaatatggcggaagagcgaccagtagcgtctctgcgagcacggactacctggtcgca
ggtgaaaaggccggaagcaaacttgccaaggcccaggagctaggcgtcgccgtgcttacc
gaagaagagttccatgcgctctgtgccggcgagtga
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