Bartonella grahamii: Bgr_13870
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Entry
Bgr_13870 CDS
T00922
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bgr
Bartonella grahamii
Pathway
bgr03030
DNA replication
bgr03410
Base excision repair
bgr03420
Nucleotide excision repair
bgr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bgr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Bgr_13870 (ligA)
03410 Base excision repair
Bgr_13870 (ligA)
03420 Nucleotide excision repair
Bgr_13870 (ligA)
03430 Mismatch repair
Bgr_13870 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bgr03032
]
Bgr_13870 (ligA)
03400 DNA repair and recombination proteins [BR:
bgr03400
]
Bgr_13870 (ligA)
Enzymes [BR:
bgr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Bgr_13870 (ligA)
DNA replication proteins [BR:
bgr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Bgr_13870 (ligA)
DNA repair and recombination proteins [BR:
bgr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Bgr_13870 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Bgr_13870 (ligA)
MMR (mismatch excision repair)
DNA ligase
Bgr_13870 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Bgr_13870 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
ACS51593
UniProt:
C6AEI8
LinkDB
All DBs
Position
complement(1551008..1553167)
Genome browser
AA seq
719 aa
AA seq
DB search
MNKDADKNLTAVEAESELEWLAKEIARHDVLYNRDDQPEISDAEYDALRRRNAEIEALFP
ELIRVDSPSHKIGAPISEKFEKSVHAQPMLSLDNAFSSEDVTEFVERIRRFLRLPETQVL
EITAEPKIDGLSLSLRYEKGRLVGAATRGDGTVGENVTANARTIADIPQVLQGDFPDIIE
VRGEVYMGREDFQALNISQQEKGKLTFANPRNAAAGSLRQLDSRITASRKLQFFAYACGE
VSEILAESQMEMMKKLKEYGFVINPLTKAFKTLEEIISYYHDIEECRHSLSYDIDGIVYK
VNDLMLQKRLGFVSRSPRWAIAHKFPAEKAIALLKDIDIQVGRTGALTPVARLTPITVGG
VVVTNASLHNEDYIKGIGHKGEPIREGRDIRVGDSVIVQRAGDVIPQVIDVIIEKRPKDA
AVFIFPHLCPACGSHAVREVGEAVRRCTGGLICPAQAIERIRHFVARNAFDIEGLGKKQV
EFFFYAQDEALCIHTPADIFTLERRQEKSLIRLENIEGFGTVSVRKLYDAINARREIPLS
RFLFALGIRHVGEVNARRLARTYKNYTAFETTAMGALMPCDKANEKGNEAWMELTNIEGI
GPQVGSAIVDFYQEAHNREVLSVLLEEVTPLDEEPITTASSPIAEKTIVFTGTLAHMSRD
EAKALAERLGAKTSGSLSKKTDLLVAGPGAGSKLAKAEELGVEVIDEETWLQLIEEHDV
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaagatgcagataaaaatctcacagctgttgaagcagaaagtgaattagagtgg
ttggcaaaagagattgcacgtcatgatgtgctttataatcgtgatgatcagcctgaaatt
tctgatgcagaatatgatgctttgcgccgccgtaatgcagaaattgaagctctttttcca
gagcttattcgtgttgattctccttcacataaaattggggcaccaatttctgaaaagttt
gaaaaatctgttcatgcacagcctatgctttcacttgataatgcgtttagctctgaagat
gttactgaatttgttgagcgtattcgtcgttttttacggcttccagaaacacaggtgttg
gaaataacagcggagccaaaaattgatggtttatctttgtctttacgctatgaaaagggg
cggcttgtgggggcggcaacgcgtggggatggaactgtcggtgaaaatgtgacggcaaat
gcccgaaccattgctgatattccacaagttttgcaaggtgattttcctgatataattgag
gtgcgtggtgaagtttatatggggcgggaggatttccaagcacttaatatcagccaacaa
gagaagggcaagttaacctttgccaatcctcgaaatgcggcagctggttcactccgtcag
cttgattcacggataaccgctagcagaaagcttcaattttttgcttatgcttgtggtgag
gtgagtgaaatattggcagaaagtcaaatggagatgatgaaaaagctaaaagaatatggc
tttgttatcaatccattaacaaaagcctttaagacgttagaagaaattatttcttattat
cacgatatcgaagaatgccgtcattctttaagctatgatattgatgggattgtttataag
gttaatgatttgatgctccaaaagcgcttggggtttgtttctcgttcgccgcgttgggca
atcgcgcataaatttccagcagaaaaagcgatagcgcttttgaaagatattgacattcaa
gttggtcgcacgggagctttgacacctgttgcacgtcttacgcctattactgttggtgga
gtggtggtgaccaatgctagtttgcataatgaggattatattaagggaattggtcataaa
ggagagcctattcgtgaaggacgtgacatccgtgtaggcgatagcgtgattgtacaacgt
gctggtgatgtgatccctcaagttattgatgttattattgaaaaacgcccgaaagatgct
gctgtctttatttttcctcatttgtgtccagcttgtgggagtcatgctgttcgtgaagtg
ggagaagccgtgcgtcgctgtacaggggggcttatttgtcctgcacaggccattgagcgt
attcgtcattttgttgcgcgtaatgcttttgatattgagggtttgggtaaaaaacaggta
gagttttttttctatgctcaagatgaagcgctttgtattcatacaccagctgatattttt
actttagaacgtcgccaagaaaaatctttgatacgtttagaaaatatagaaggttttggt
actgtttcagttcgcaaattgtatgatgccattaatgcacgtcgcgaaattcctttaagc
cgttttttgtttgcattggggattcgtcatgttggagaggtgaatgcacgccgtcttgcg
cgtacttataaaaattatacagcttttgaaactacggctatgggagcacttatgccatgt
gataaggcaaatgaaaaaggcaatgaagcttggatggagcttaccaatatcgaaggaatt
ggaccacaggtagggagcgcaattgttgatttttatcaagaagcgcataatcgtgaggtt
ttgtctgttttacttgaagaagtaactcctcttgatgaagagcctatcacgacagcttct
tccccaatagcggagaagacaattgtttttacaggaactttggcgcatatgtcacgcgat
gaagcaaaagcattggcagagcgattaggggccaaaacatctggttcactttctaaaaaa
acagatcttcttgttgcaggacctggagcgggctccaaattggctaaagctgaagaatta
ggtgttgaggttatcgatgaagagacttggctacagttgattgaggaacatgatgtttag
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