Borreliella garinii SZ: X921_01520
Help
Entry
X921_01520 CDS
T03259
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bgs
Borreliella garinii SZ
Pathway
bgs03030
DNA replication
bgs03410
Base excision repair
bgs03420
Nucleotide excision repair
bgs03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bgs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
X921_01520 (ligA)
03410 Base excision repair
X921_01520 (ligA)
03420 Nucleotide excision repair
X921_01520 (ligA)
03430 Mismatch repair
X921_01520 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bgs03032
]
X921_01520 (ligA)
03400 DNA repair and recombination proteins [BR:
bgs03400
]
X921_01520 (ligA)
Enzymes [BR:
bgs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
X921_01520 (ligA)
DNA replication proteins [BR:
bgs03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
X921_01520 (ligA)
DNA repair and recombination proteins [BR:
bgs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
X921_01520 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
X921_01520 (ligA)
MMR (mismatch excision repair)
DNA ligase
X921_01520 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
X921_01520 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
BRCT
HHH_5
DNA_ligase_ZBD
HHH_2
PTCB-BRCT
ELYS-bb
PTSIIA_gutA
DUF4796_N
CEBP_ZZ
Motif
Other DBs
NCBI-ProteinID:
AHZ74004
LinkDB
All DBs
Position
complement(338947..340929)
Genome browser
AA seq
660 aa
AA seq
DB search
MSIKIQQEIEDLKKLIRKWDKEYYVDSLPSVEDFVYDNHILRLKELESKHPEYKTLDSPT
LKFGSDLLNNFEEVEHSVPILSLDKVYDLDLLKSWIDKIDFNNSFNISVEPKIDGCSIVL
YYKDGILEKALTRGNGKFGNDVTKNIRTIRHIPLFLDEKVDLVLRGEVYITKENFFKINK
FLEKPYTSSRNLASGILRRIDSREVANFPLNIFIYDFLNAELEFKTNDLAIAKLKKLGFK
VDPLIRFFDQKSSIREVLNYIADITKQRNSFEYEIDGVVLKVSEFVLREKLGYTSHHPKW
AMAYKFEALSGFSRVNSIVVQVGRSGKITPVANIDKVFVSGAFITNATLHNQDYIISIGL
NVGDVVKVSRRGDVIPAVEMVINKCSKGVFKVPDNCPACKTVVVKEGAHFFCTNNSCPSV
AVERIKYFCSKNCMDIEGFSDKTISFLFEKEFISSEIDLYTFNFYKLLKFKGFKDRKVYN
LINSIEASKKKPFSKLLLSIGIKELGENAIRLLFLNNLNSFSKLFRLCQDRNFAFSTLLK
IKGIGEKIALNIIEAFNDSIMLNKFKFFENLGFKMEESILIDDKNRLLAGKKFCITGTFN
GYSRPIIIEKLKNKGAIFKTCVTEGLDFLIVGEKAGSKLEKALNLNVKIMSFEDIKSYLD
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atgagcattaaaatacagcaagaaattgaagacttaaagaagttgatcagaaagtgggat
aaagagtactatgtcgattctttgcctagtgttgaagattttgtatatgataatcacatt
ttaaggcttaaagagttagaaagtaagcatcccgaatataagaccttggattctcctact
cttaaatttggtagcgatcttttgaataactttgaagaggttgaacattctgttcctata
ttaagtcttgataaggtttatgatcttgatttgctaaaatcatggatagataagattgat
tttaataattcttttaatatttctgttgaaccaaagattgatggatgttctattgttctt
tattataaagatggtattcttgaaaaagctcttactaggggtaatgggaaatttggcaat
gatgttactaaaaacattagaaccattaggcatatccccttatttcttgatgaaaaggtt
gatttagtattaaggggtgaagtttatattactaaagaaaatttttttaaaataaataag
tttttggaaaagccttatactagttctagaaatttagcctcaggaatactcagaaggatt
gatagcagagaggttgctaatttccctttaaatattttcatttatgattttttgaatgct
gaactagagtttaaaaccaatgatttggctattgcaaaacttaaaaaattgggctttaag
gtcgatcctttgattaggttttttgatcaaaaaagttcaattagagaagttttaaattac
atagcagatataacaaaacaaagaaattcttttgagtatgaaatagatggagttgttctt
aaggttagcgagtttgttttaagggaaaaattagggtatacctcgcaccatcctaaatgg
gcaatggcttataaatttgaagcgctttcgggttttagtagggtaaatagcattgttgtt
caggttgggcgtagtggtaaaattactccggttgctaatattgataaagtttttgtttca
ggggcttttattactaacgcaacattgcacaatcaagattatataatatctattggttta
aatgttggggatgttgttaaagtttcaagaaggggagatgtaattcctgctgttgaaatg
gtgataaataaatgttcaaaaggagtttttaaggttcctgacaattgtccagcttgtaaa
acggttgtagtaaaagaaggggcacattttttttgtacaaataatagttgtccttcagta
gcagttgagagaataaaatatttttgtagtaaaaattgtatggatattgaagggttttcc
gataagactatttcttttctttttgagaaagaatttatttcttcagaaattgatctttat
acatttaatttttataaacttcttaaatttaaaggctttaaagatagaaaggtatataat
ttgataaattcaattgaagctagcaaaaaaaaaccatttagcaaattacttcttagcata
ggaattaaagagttgggagaaaacgccataaggttattatttcttaataatttaaattca
ttttcaaagctttttaggctttgtcaagacaggaattttgctttttcaacattgttgaaa
attaaaggaataggggagaaaattgctttaaatattattgaagcttttaatgattcaata
atgctcaataagtttaaattttttgaaaatttgggatttaaaatggaagagtctattttg
attgatgataaaaacaggttattagctggtaaaaagttttgtattactggaacttttaac
ggttattctaggccgattattattgagaaactaaaaaacaaaggagcaatttttaaaact
tgtgttactgagggtttagattttcttatcgtaggagaaaaagctggatcaaagcttgaa
aaagctttaaatttgaatgtaaaaattatgtcttttgaagacataaagagttatttagat
taa
DBGET
integrated database retrieval system
