Burkholderia glumae LMG 2196 = ATCC 33617: KS03_2230
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Entry
KS03_2230 CDS
T03820
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bgu
Burkholderia glumae LMG 2196 = ATCC 33617
Pathway
bgu03030
DNA replication
bgu03410
Base excision repair
bgu03420
Nucleotide excision repair
bgu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bgu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KS03_2230 (ligA)
03410 Base excision repair
KS03_2230 (ligA)
03420 Nucleotide excision repair
KS03_2230 (ligA)
03430 Mismatch repair
KS03_2230 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bgu03032
]
KS03_2230 (ligA)
03400 DNA repair and recombination proteins [BR:
bgu03400
]
KS03_2230 (ligA)
Enzymes [BR:
bgu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KS03_2230 (ligA)
DNA replication proteins [BR:
bgu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KS03_2230 (ligA)
DNA repair and recombination proteins [BR:
bgu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KS03_2230 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KS03_2230 (ligA)
MMR (mismatch excision repair)
DNA ligase
KS03_2230 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KS03_2230 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
MctB
Bap31_Bap29_C
Motif
Other DBs
NCBI-ProteinID:
AJY64982
LinkDB
All DBs
Position
I:2436308..2438551
Genome browser
AA seq
747 aa
AA seq
DB search
MARTTPAAPPASQPSERAAWLRQELERANHAYYVLDQPELLDAEYDRLFRELQQIEAEHP
DFITPDSPTQRVGGEAADGFTPVLHDAPMLSLNNGFTDEDIAAFDKRVADALGKAVDLAG
TAEPVEYACELKFDGLAISLRYVHGKFTQAATRGDGTTGEDVTENVRTIKSIPLTLKGKH
PPALLDVRGEVLMYKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDSKVTAQRPLSFF
AYGIGVLDGAPMPDTHSGLLDWYESLGLPVNRERAVVQGAEGLLDFFRKVGEKREALPYD
IDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEARTRLVAIEVQVGRTGAITPVARL
EPVFVGGATVTNATLHNEDEVRRKDIRVGDTVIVRRAGDVIPEVVGRDGPHAMQVRVRFR
GVRTVARRNRLRAAASSGRPMTWKPRLLKPTDRRGIRVRRGCLRPSLFEFVEQEPFRMPT
ECPVCGSRIERLPDEAIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQLVEQN
LVRTPADLFHLGFATLAALDRFAEKSAQNLLDSLEKARHTTLARFIYALGIRHVGESTAK
DLAKHFGALQPIMDASIDALLEVNDVGPVVAESLHQFFAEEHNRTVIAQLREKVDWPEGP
PAPREPQGVLAGKTVVLTGTLPTLSRDEAKALLEAAGAKVTGSVSKKTDYVVAGAEAGSK
LAKAEELGIPVLDEDGMHQLLKGESPS
NT seq
2244 nt
NT seq
+upstream
nt +downstream
nt
atggcccgaaccaccccagccgccccccccgccagccagccgtccgagcgcgcggcgtgg
ctgcgccaggaactcgagcgcgccaaccacgcgtattacgtgctcgaccagcccgaactg
ctcgatgccgagtacgaccggctgtttcgcgaactgcagcagatcgaggccgagcacccc
gacttcatcactcccgattcgccgacccagcgcgtgggcggcgaggccgccgacggcttc
acgccggtgctccacgacgcgccgatgctctcgctcaacaacggcttcaccgacgaggac
atcgccgcgttcgacaagcgggtggccgacgcgctcggcaaggcggtcgatctggccggc
accgccgagccggtcgaatacgcctgcgagctgaaattcgacgggctcgcgatctcgctg
cgctacgtgcatggcaagttcacgcaggccgccacgcgcggcgacggcaccaccggcgaa
gacgtgaccgagaacgtgcgcaccatcaagtcgattccgctgacgctgaagggcaagcat
ccgcccgcgctgctcgacgtgcgcggcgaggtgctgatgtacaagcgcgatttcgcgcgc
ctcaacgagcgccagcgcgcggccgagcagcgcgagttcgccaacccgcgcaacgcggcg
gccggcagcctgcgccagctcgattcgaaggtcaccgcgcagcgcccgctgtcgttcttc
gcctatggcatcggcgtgctcgacggcgcgccgatgcccgacacgcacagcggcctgctc
gactggtacgagtcgctcggcctgccggtcaatcgcgagcgcgccgtggtgcagggcgcc
gaagggctgctcgacttcttccgcaaggtcggcgagaagcgcgaggcgctgccctacgac
atcgacggggtggtctacaaggtcaaccggcgcgacgagcaggaccggctcggcttcgtc
tcgcgcgcgccgcgcttcgcgctcgcgcacaagttcccggcccaggaggcgcgcacgagg
ctcgtcgcgatcgaggtgcaggtgggccgcaccggcgcgatcacgccggtcgcgcggctc
gagccggtgttcgtgggcggcgcgaccgtcaccaacgcgacgctgcacaacgaggacgaa
gtgcgccgcaaggacatccgggtcggcgacacggtgatcgtgcggcgcgccggcgacgtg
attcccgaggtggtcggccgggacggcccgcacgcgatgcaggtgcgggtccggtttcgc
ggggtgcggacggtcgcgcggcgcaaccggctgcgcgcggccgcctcgtcgggccggccg
atgacctggaagccgcggctgctgaagccgacggatcgccgcggcatccgggtgcggcgg
ggatgcctgcggccgagcctgttcgagttcgtcgagcaggaaccgttcaggatgccgacc
gaatgccccgtgtgcggctcgaggatcgagcgcctgcccgacgaggcgatcgcgcgctgc
acgggcgggctgttctgccccgcgcagcgcaagcaggcgctctggcatttcgcgcagcgc
cgcgcgctcgacatcgacgggctaggcgagaagatcatcgaccaattggtcgagcagaac
ctcgtgcgcaccccggccgacctgttccatctcggcttcgcgacgctcgccgcgctcgac
cgcttcgccgagaagtccgcgcagaacctgctcgattcactcgagaaggcgcgccacacc
acgctcgcgcgcttcatctacgcgctcggcatccgccacgtcggcgaatcgaccgcgaag
gacctggccaagcacttcggcgcgctgcagccgatcatggatgcctcgatcgacgctctg
ctcgaagtcaacgacgtcggcccggtggtggccgaatcgctgcatcagttctttgccgag
gaacacaaccgcaccgtgatcgcgcagctgcgcgagaaggtggactggcccgaggggccg
cccgcgccgcgcgagccgcagggcgtgctggccggcaagaccgtggtgctgacgggcacg
ctgcccacgctctcgcgcgacgaagcgaaggcgctgctcgaggcggccggcgcgaaggtg
acgggttcggtctcgaagaagaccgactacgtggtggccggcgcggaggcgggcagcaag
ctcgcgaaggccgaggaactcggcatcccggtgctcgacgaggacgggatgcatcaactg
ctgaaaggggaatcaccgtcatga
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integrated database retrieval system
