Bordetella genomosp. 8: CAL12_19550
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Entry
CAL12_19550 CDS
T09515
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bgv
Bordetella genomosp. 8
Pathway
bgv03030
DNA replication
bgv03410
Base excision repair
bgv03420
Nucleotide excision repair
bgv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bgv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CAL12_19550 (ligA)
03410 Base excision repair
CAL12_19550 (ligA)
03420 Nucleotide excision repair
CAL12_19550 (ligA)
03430 Mismatch repair
CAL12_19550 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bgv03032
]
CAL12_19550 (ligA)
03400 DNA repair and recombination proteins [BR:
bgv03400
]
CAL12_19550 (ligA)
Enzymes [BR:
bgv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CAL12_19550 (ligA)
DNA replication proteins [BR:
bgv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CAL12_19550 (ligA)
DNA repair and recombination proteins [BR:
bgv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CAL12_19550 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CAL12_19550 (ligA)
MMR (mismatch excision repair)
DNA ligase
CAL12_19550 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CAL12_19550 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
BRCT_2
CCDC28
Macro
Motif
Other DBs
NCBI-ProteinID:
ARP82791
UniProt:
A0A1W6YP54
LinkDB
All DBs
Position
complement(4294467..4296626)
Genome browser
AA seq
719 aa
AA seq
DB search
MGAGRPARRQPACAAGVFVKAGKDTRAAQEEIARLRVEIEQHNYRYYVEDAPSVSDAEYD
GLMRRLEALEKDHPELVTPESPTQRVGATPLAAFGAVTHAVPMLSLGNAFDEEEVRAFDK
RVTDTLRSSGQLGPTAEPDYFCELKLDGLAISLRYEDGKLAQAATRGDGQTGEDVTANIR
TIRSIPLQLKAGAPRVLEVRGEVLMNRREFERLNEAQAARGEKVFVNPRNAAAGSLRQLD
PKITAQRPLRFFAYGWGEVHGLAGRQAGKFDEPAPGTRETSTLPRESHGAMLDWLAELGL
PINTQHNRKARGADGLLDFYARVAKLRPTLAYDIDGVVYKVDSLPAQKVLGFVARAPRFA
LAHKYPAEEATTTLQDIEVQVGRTGAITPVARLQPVFVGGVTVTNATLHNEDEIRRKDVR
IGDTVIVRRAGDVIPEVVGPVLEKRPADAREFSMVTACPVCGSAIERPEGEAIARCTGGL
FCAAQRKQTLLHAAGRKALDIEGLGEKLVDQLVERGRVKSLADIYSLTVEELAGLDRMGA
KSAENLVHAIDKARKPTLGRLLFALGIRHVGETTARDVARHFGDMDAIMDASEEQLLEVA
DVGPAVAASIHRFFAEHHNRDIVEALRQQGVHPVAEAAARTGGLSGKTFVLTGTLPNWTR
EEATSHILAAGGKVSGSVSKKTAYVVAGAEAGSKLANAEKLGVPVLDEDGLKQLLGVKD
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
attggagcaggccggcctgcgcgccggcagcccgcgtgcgctgcgggtgttttcgtgaag
gcaggcaaggacacccgcgccgcgcaggaagaaatcgcgcggctgcgcgtggaaatcgag
cagcacaattaccggtattacgtcgaagacgcgcccagcgtttccgatgccgaatacgac
ggcctgatgcgccggctggaagcgctggaaaaagaccatcccgagctcgtcacgccggag
tcgcccacgcaacgcgtgggcgcgacgccgttggcggcgttcggcgcggtcacccatgcc
gtgcccatgctgtcgctgggcaatgccttcgacgaagaagaagtccgcgccttcgacaag
cgggtcacggacacgctgcggtcttccggccagttggggccgaccgccgagcccgactat
ttctgcgaactcaagctggacgggctggccatcagcctgcgctacgaagacggcaagctt
gcacaggccgccacccgcggcgacggccagaccggggaagacgtcaccgccaacatccgc
accatccgttccatcccacttcagctgaaggcgggcgcgccccgcgtgctggaggtgcgc
ggcgaagtgctgatgaaccgccgcgagttcgagcgactgaacgaagcccaggcggcgcgc
ggcgagaaggtgttcgtcaatccgcgcaatgcggcggcaggcagcctgcggcaactggat
cccaagatcacggcgcagcggcccttgcgcttcttcgcctacggttggggcgaggtgcac
gggcttgcgggacgccaggccggcaagttcgacgaaccggcgccgggcacccgcgagact
tccacgctgccgcgcgaatcgcatggcgcgatgctggattggctggccgaactgggcctg
cccatcaatacccagcacaaccgcaaggcgcgcggcgcggacggcttgctggatttctac
gcccgggtcgcgaagctgcggcccacgctggcctatgacatcgacggcgtggtgtacaag
gtcgactcgctgccggcgcagaaggtgctgggtttcgtggcgcgggcgccgcgcttcgcc
ctggcgcacaaatatcccgccgaagaggccaccaccacgctgcaggatatcgaagtgcag
gtggggcgtaccggcgcgattacgccggtggcccgcctgcagccggtgttcgtcggtgga
gtgacggtcaccaatgcgaccctgcacaatgaagacgagatccgccgcaaggatgtgcgc
atcggcgataccgtcatcgtgcggcgggccggcgacgtcatccctgaagtggtgggaccg
gtgctggaaaagcggcctgccgatgcacgcgaattcagcatggtcaccgcctgtccggtc
tgcggctcggccatcgagcggccggaaggcgaggcgatcgcccgttgcacgggcggcctg
ttctgcgcggcgcagcgcaagcagacgctgctgcatgcggccggacgcaaggccctggat
atcgaggggctgggcgaaaaactggtcgaccaactcgtcgaacgcggccgggtcaagtcc
ctggcggatatctacagcctgaccgtggaagagcttgccggcttggaccgcatgggcgcg
aagtcggccgaaaacctggtgcacgccatcgacaaggcgcgcaagccgacgttgggccgc
ctgctgttcgcgctcggcatccgccacgtcggcgaaacgacggctcgcgatgtcgcccgg
catttcggcgatatggacgccatcatggatgccagcgaagagcagttgctggaagtggcc
gatgtagggcccgcggtggcggcatccatccatcgcttcttcgccgagcatcacaatcgc
gacatcgtcgaagcgctgcggcagcagggggtgcatccggtggccgaagccgccgcgcgt
accggcggcctgtcgggcaagaccttcgtcctgaccggcaccttgccgaactggacgcgc
gaggaagccaccagccatatcctggccgcgggtggcaaggtcagcggttcggtgtccaag
aagacggcctatgtcgtcgcgggcgcggaggccggcagcaagctggccaacgccgagaag
ctgggtgtgccggtgctggacgaggacgggctcaagcagttgctgggtgtgaaggattga
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