Candidate division Kazan bacterium GW2011_GWA1_50_15: VE98_C0001G0224
Help
Entry
VE98_C0001G0224 CDS
T03988
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase, DNA ligase (NAD+)
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bgw
Candidate division Kazan bacterium GW2011_GWA1_50_15
Pathway
bgw03030
DNA replication
bgw03410
Base excision repair
bgw03420
Nucleotide excision repair
bgw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bgw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VE98_C0001G0224 (ligA)
03410 Base excision repair
VE98_C0001G0224 (ligA)
03420 Nucleotide excision repair
VE98_C0001G0224 (ligA)
03430 Mismatch repair
VE98_C0001G0224 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bgw03032
]
VE98_C0001G0224 (ligA)
03400 DNA repair and recombination proteins [BR:
bgw03400
]
VE98_C0001G0224 (ligA)
Enzymes [BR:
bgw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
VE98_C0001G0224 (ligA)
DNA replication proteins [BR:
bgw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
VE98_C0001G0224 (ligA)
DNA repair and recombination proteins [BR:
bgw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
VE98_C0001G0224 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
VE98_C0001G0224 (ligA)
MMR (mismatch excision repair)
DNA ligase
VE98_C0001G0224 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
VE98_C0001G0224 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
AKM84681
UniProt:
A0A0G4B9V9
LinkDB
All DBs
Position
215580..217556
Genome browser
AA seq
658 aa
AA seq
DB search
MNKVEARVEIERLRRELNRHSRLYYVLDKPEISDAEYDRLYRKLVGLEAEYPDLVVPDSP
TRRVGDKVSGEFASIRHIRPRMSLDDAFSYSEVQAFEERAKKLTEAKLEYVCELKIDGLQ
IVLTYRSGLLTTAATRGDGITGEDVTHTVRTIRDIPLKLSKPLDIVVSGEIYISKKDFAK
INAEQTKAGGQLYANPRNLAAGTVRQLDPRVASTRRLRSFVYDLEGEVSPKTQMDILKNL
ADLGFSTNAENKLCQNLGEVEKFIQRWGNERNKLPYETDGVVVKVNDMAARRRLGATAKA
PRWAIAYKFPAEQKPTKVLDIVVQVGRQGTLTPVAVLEPVLLAGSTVSRATLHNEDEIKR
KDVRVGDTVIVQKAGDIIPEVISVIKSKRPATAKPFKMPTTCPICSGKVVRVEGEAAHKC
VNKNCFVVQLRKLEHFVSRDAFDIKGLGTKILEQLYKEGLVRDPADIFTLEEGDIEPLER
FAEKSAGNLIKSIQGAKTISLDRFIYALGILHVGAQTARDLTGMFRNLDELLHAFPESFR
EVDGVGDKVAQSIFEFFQDEHNLGLVKKLLQAGIIIKQAVRSTGDRLNGQTFVITGTLAS
MSREEAEDKIRALGGKASGSVSAKTSFVVVGDNPGSKYTQANKLGVKILDEKEFIKLV
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaggtagaggccagagtggaaatcgagcgattgaggagggaattgaaccggcat
agccggttgtattatgtgttggacaagccggagatcagcgacgccgagtatgaccggcta
taccgcaaattggtcgggctggaggccgaatatcctgacttggttgtacccgactctcca
acgagaagggtgggggataaggtctcgggtgagtttgcttccattcgtcatatccgtccg
cggatgagtttagatgatgcgttctcgtattcagaagtgcaggcgttcgaagagcgcgcc
aaaaaactgactgaggcaaaattagagtatgtctgtgaattgaagatagacggcctgcag
atcgtactgacctatcgcagtgggttactcactacggccgcgacccgaggggatggcatc
accggggaggatgtgactcacaccgtgagaacgatacgggatattccgctgaaattatcc
aaaccattagatattgtcgtatctggcgaaatttatatcagcaaaaaggactttgccaag
attaacgcggagcaaaccaaagccggcggtcaactttacgccaacccccgcaatttggcg
gccgggacggtgcggcagctggacccaagggtggcgtccacccgacggcttagaagtttt
gtttatgatctagaaggggaggtaagtcccaagacccagatggatattttgaaaaacttg
gcggacctaggattttcgactaatgcagaaaataagctctgccaaaatttgggggaggtg
gaaaaatttattcagcgttgggggaacgagcggaataaattaccgtatgaaactgatggt
gtggtggtgaaggtcaacgatatggctgcgcgccgccggctaggggccacggccaaggca
ccgcgctgggccatcgcctataaatttccggccgaacagaaaccgaccaaagttttggat
atcgtcgtgcaggtggggagacaagggacattgacgccggtggcagtactggaaccggtg
ttattggccggttcaacagtgagccgggcgactttgcacaatgaagatgagataaaacgc
aaagatgtacgggtaggggatacggtgatagttcaaaaagccggcgatatcatcccggaa
gtgatcagtgtgataaaatccaaacggccggcgacagccaaaccattcaagatgccgacc
acttgtccgatctgcagtggcaaggtagtacgagtcgagggcgaagctgcgcacaagtgc
gtgaataaaaattgtttcgtggtccagctgcgtaaattggagcactttgtttcccgagac
gcttttgatattaaaggcttaggcaccaagatactggaacaactttataaagagggttta
gtacgcgacccggcggatatctttactttagaagagggcgatattgagcccctagagcga
tttgcggaaaagagtgctggcaatttaattaaatccattcaaggtgccaaaaccatttcg
ctggacagatttatttacgccttagggattttgcatgtcggagcccagacggcgcgggac
ctgacggggatgtttcgcaatttggatgaactgctacacgcctttccggagagttttcgg
gaggtagacggggtaggggacaaagtggcacaaagtatatttgagttttttcaagatgag
cacaacctagggttagtgaaaaagttgttgcaagcggggataattatcaagcaagccgtc
cgttcaaccggcgacagattgaatggacaaaccttcgtgataactggaactttagcgtcc
atgtctcgtgaggaggcggaggataagattcgtgctttaggcgggaaagccagcgggtcg
gtctccgccaaaactagttttgtggtagttggagataatccgggcagcaagtacacccaa
gctaataaattaggcgtgaagattttagatgagaaagaatttattaaattagtttaa
DBGET
integrated database retrieval system