Bifidobacterium pullorum subsp. gallinarum: ESN35_07105
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Entry
ESN35_07105 CDS
T06507
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bgx
Bifidobacterium pullorum subsp. gallinarum
Pathway
bgx03030
DNA replication
bgx03410
Base excision repair
bgx03420
Nucleotide excision repair
bgx03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bgx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ESN35_07105 (ligA)
03410 Base excision repair
ESN35_07105 (ligA)
03420 Nucleotide excision repair
ESN35_07105 (ligA)
03430 Mismatch repair
ESN35_07105 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bgx03032
]
ESN35_07105 (ligA)
03400 DNA repair and recombination proteins [BR:
bgx03400
]
ESN35_07105 (ligA)
Enzymes [BR:
bgx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ESN35_07105 (ligA)
DNA replication proteins [BR:
bgx03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ESN35_07105 (ligA)
DNA repair and recombination proteins [BR:
bgx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ESN35_07105 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ESN35_07105 (ligA)
MMR (mismatch excision repair)
DNA ligase
ESN35_07105 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ESN35_07105 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
PTCB-BRCT
Nlig-Ia
HHH_3
Motif
Other DBs
NCBI-ProteinID:
QAY33202
UniProt:
A0A4V0YB68
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All DBs
Position
CACC514:complement(1615796..1618549)
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AA seq
917 aa
AA seq
DB search
MSRTPSSPESEQLAWDFDVVDGSEQTPVEAEVPTGAAAFAPGSAAWIGALQANDADAMRL
SALDASALDVDDAARLWAKVAAWVESDQIAYYIDDAPVSSDAAYDARMRCLKALEAAFPS
LDSPQSPTHRVGGTFSNEFASVRHPSRMMSLDDVFSIEELRDWYDGVRRDLDWPEGRPLP
MSCEVKIDGLALNLIYRGGVLEQGLTRGDGVTGEDITLNVRTIASIPQTLGGESLDIPDF
VEIRGEVFMRWDDFRALNDENADAGRAPFANPRNAAAGSLRQKDPRITATRRLSFYAHGI
GRLDWGAGRAAGSHDEIADQSQAYDLYRKWGIPVSPHNRTVSTFDEVLEMIGYYGEHRGD
IEHALDGIVVKVDDLALQRALGATSRAPRWAVAYKYPPEEVNTELLDITVQVGRTGRVTP
VAILKPVHVAGSTVARTTLHNPFEVKRKGVLIGDTVVVRKAGDVIPELVGPVLERRKGRE
DRLREFVMPERCPSCGARLAPAKEGDKDIRCPNVESCPAQLTERIINLASRKAFDIEHLG
DQSAIALTNPEENRPDAVELYAPHLGGTRHEIVVAPGEEPADYEPVPGLTLPPAQTPVLT
SEAGLFDLNVDDLRDVRVWREIPIIEVRESVGANGTRKKVRRRIGGSGLWYQTEAFWTAP
APARKLTAKQLAEREGASETTDGHVGEPTGAESRADSAGATAYPGYDVPSDAVVVRTETK
GTGVQPIITRPMENTRKMLDEIEKARHADLWRVLVALSIRRLGPPTARLVASAFGSLDAI
ANATAEDLSQIDGIGPEIAESVVHWFAAAREDGDWRGAILKAWRAAGVGTTVETNDLPQT
LTGKTVVVTGSLEDFSRDSAKEAIIARGGKAAGSVSRKTDYVVVGANAGSKAAKAEELGL
PMLDEDGFKRLLETGEA
NT seq
2754 nt
NT seq
+upstream
nt +downstream
nt
atgagcaggacgccttccagccctgaatccgaacagctggcgtgggatttcgacgttgtc
gacggctcggagcagacgccggtcgaagcggaggtgccgaccggcgccgcagcgttcgcc
cccggatcggcggcctggatcggcgcgctgcaggcgaacgacgcggacgcgatgcggctg
tccgcgctggatgcgtccgcattggacgtggacgatgcggcccggctgtgggccaaggtg
gccgcgtgggtggagtccgaccagatcgcctactacatcgacgatgcgccggtgtcctcc
gacgccgcctacgatgcgcgcatgcgctgcctgaaggcgttggaggcggcgttcccctcg
ctggattcgccgcagtcgcccacgcaccgcgtcgggggcacgttctcgaacgagttcgcc
tcggtccggcatccctcgcgcatgatgagcctggacgacgtgttctcgatcgaggagctg
cgcgactggtacgacggcgtgcgccgcgacctggactggcccgagggccggccgctgccg
atgagctgcgaggtcaagatcgacggcctggcgctgaacctcatctaccgcggcggcgtg
ctcgaacagggactaacccgcggcgacggtgtgaccggcgaggacatcacgctgaacgtg
cgcaccatcgcctcgatcccgcagaccctgggcggtgagtccttggatatccccgacttc
gtggagattcgcggcgaggtgttcatgcggtgggacgacttccgggccctgaacgatgag
aacgcggacgcggggcgtgcgccgttcgccaatccgcggaacgccgcggccggatcgctg
cggcagaaggacccgcgcatcaccgccacgcgtcgcctgagcttctacgcgcacggcatc
ggccggctcgactggggcgccggacgcgccgccggctcgcacgacgagatcgccgaccag
tcgcaggcatacgacctgtaccgcaagtggggcatccccgtctccccgcacaaccgcacc
gtctccaccttcgacgaggtgctggagatgatcggctattacggcgaacaccgcggcgac
atcgaacacgcgctcgacggcatcgtggtcaaggtcgacgacctggcgctgcagcgcgcg
ctgggggccacctcgcgcgccccgcgctgggcggtcgcctacaaatacccgccggaggag
gtcaacaccgaactgctcgacatcaccgtgcaggtcggccgcaccggccgcgtcacgccg
gtcgccatcctgaaacccgtgcatgtggccggctccaccgtggcccgcaccaccctgcat
aaccccttcgaggtcaaacgcaagggcgtgctcatcggggacacggtcgtcgtgcgcaag
gccggcgacgtgatccccgaactggtcggaccggtgctggaacgccgcaaagggcgcgag
gatcggctgcgcgaattcgtcatgccggagcgctgcccctcctgcggggccagactcgcc
ccggccaaggagggcgacaaggacatccgctgcccgaatgtggagagctgtccggcgcag
ctgaccgaacgcatcatcaacctggcctcgcgcaaggccttcgacatcgagcacctgggc
gatcagagcgccatcgccctgaccaatcccgaggagaaccgccccgatgcggtggagctg
tacgccccgcacctgggcggcacccggcacgagatcgtggtggcgcccggcgaggagccg
gccgactacgagccggttccgggcctgacgctgccgccggcgcagacccccgtgctgacc
agcgaggccgggctgttcgacctgaacgtggacgacctgcgcgacgtgcgcgtctggcgc
gagatcccgatcatcgaggtgcgcgaaagcgtcggagcgaacggcacgcgcaagaaggtg
cgcaggcgcatcggcggcagcgggctgtggtaccagaccgaggcgttctggaccgcgccg
gcccccgcccggaagctcaccgccaaacaattggccgaacgggaaggcgcgtcggaaacc
acggacgggcatgtcggggagccgacgggtgcggagagccgtgccgactccgcaggggcg
acggcgtatccggggtacgacgtgccgtccgatgcggttgtcgtgcgcacggagacgaag
gggacgggcgtccagccgatcatcacccggccgatggagaacacgcgcaagatgctcgac
gagatcgagaaggcccgacacgcggacctgtggcgcgtgctcgtggcgttgtcgatccga
cgcctgggcccgcccaccgcgcggctggtcgcctccgcgttcggctcgctcgacgcgatc
gcgaacgccaccgcggaggacctctcgcagatcgacggcatcggcccggagatcgccgaa
tcggtggtgcactggttcgccgcggcacgcgaggacggcgactggcgcggcgcgatcctg
aaggcgtggcgcgcggccggcgtcggcaccactgtggagaccaacgacctgccgcagacc
ctgaccggcaagaccgtggtggtcaccggctcgctcgaggacttctcgcgcgactccgcc
aaggaggcgatcatcgcccgcggcggcaaggcggccggatcggtcagcaggaagaccgac
tacgtcgtcgtcggcgcgaacgccgggtccaaggccgccaaggccgaggaactggggctg
ccgatgctcgacgaggacggcttcaagcggctgctggaaaccggcgaggcgtga
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