Halalkalibacterium halodurans: BH0649
Help
Entry
BH0649 CDS
T00039
Symbol
lig
Name
(GenBank) DNA ligase (polydeoxyribonucleotide synthase (NAD+))
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bha
Halalkalibacterium halodurans
Pathway
bha03030
DNA replication
bha03410
Base excision repair
bha03420
Nucleotide excision repair
bha03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bha00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BH0649 (lig)
03410 Base excision repair
BH0649 (lig)
03420 Nucleotide excision repair
BH0649 (lig)
03430 Mismatch repair
BH0649 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bha03032
]
BH0649 (lig)
03400 DNA repair and recombination proteins [BR:
bha03400
]
BH0649 (lig)
Enzymes [BR:
bha01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BH0649 (lig)
DNA replication proteins [BR:
bha03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BH0649 (lig)
DNA repair and recombination proteins [BR:
bha03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BH0649 (lig)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BH0649 (lig)
MMR (mismatch excision repair)
DNA ligase
BH0649 (lig)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BH0649 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
HHH
PTCB-BRCT
RNA_pol_A_CTD
Zn_ribbon_NUD
HHH_3
BRCT_2
AphA_like
zf-IS66
zf-tcix
Motif
Other DBs
NCBI-ProteinID:
BAB04368
UniProt:
Q9KF37
LinkDB
All DBs
Position
701864..703873
Genome browser
AA seq
669 aa
AA seq
DB search
MERNDAERKIEKLRNQLEEYGYHYYVLDKPLVSDAEYDGLMNELIELEEAFPELKSDTSP
SVRVGGPPLPHFEKVEHRTPMLSLGNAFSDQDLRDFDRRVRQVVGDEVTYSCELKIDGLA
ISLIYESGRFVRGATRGDGTTGEDITQNLRTIPSIPLRLKEAVSLEVRGEAFMPKRSFEA
LNEAKEAAGEERFANPRNAAAGSLRQLDPKLAAKRHLDAFIYAIGSVEGKELHSHHEGLN
YLKTIGFKINPESAYCESIDEVIDYVNSWLERRADLPYEIDGIVIKVDNVNFQEQLGYTA
KSPRWAIAYKFPAEEVITTLLDITLNVGRTGVVTPTAELKPVTVAGTTVKRASLHNEDLI
REKDIRLGDSVVVKKAGDIIPEVVNVLTELRTGEERPFSMPTHCPECGSELVRLEGEVAL
RCINPQCPAQIREGLIHFVSRQAMNIDGLGEKVITQLFEHGLIHNVADLYKLNKDELLQL
ERMGEKSVNNLLASIETSKKSSLERLLFGLGIRFVGSKAAKTLAMHFPTMTELRRASYDE
LIAVNEIGEKMAASIVSYFEKPEVNELIDELASLGVNMTYNGPKPIGEEEIADSPFAGKT
VVLTGKLQALTRGEAKEKIEALGGKVTGSVSKNTDLLVAGEDAGSKLTKAKELNIEIWDE
EALVKAISH
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atggaacgaaacgatgcagagcggaaaattgaaaagcttcgtaaccagcttgaagaatac
ggctaccactactatgtgttggacaagcctcttgtctctgatgcagagtatgatggatta
atgaacgaattaattgagctagaagaagcttttcccgaattgaaatccgatacatcgcct
agtgtgcgagtcgggggaccaccacttcctcattttgagaaagtagaacaccgcacaccg
atgcttagcttagggaacgctttttccgatcaggatttacgtgattttgaccgccgcgtt
cgtcaagtcgtgggcgatgaggtcacctatagttgtgagctgaaaattgatggtttggca
atctcattaatttacgaaagcggacgttttgtccgaggggcgactcgtggtgatggaacg
actggggaggatatcacgcaaaacttgcggacgattccttcgattcccttgcgcttaaaa
gaagcggtcagccttgaggttcgcggggaagcgtttatgccgaaacgctcgttcgaagcg
ttgaatgaagcgaaggaagcggcgggagaagaacgatttgccaacccgcgtaacgcagcg
gctgggtctttgcgtcagcttgacccgaagctagcggcgaaacgtcacctcgatgcgttt
atttacgcgatcggaagtgtggaaggaaaagagctccattctcaccatgaggggttaaac
tatttaaaaacgatcggctttaagattaatcccgaaagcgcctattgcgaatcaatcgat
gaagttattgactatgtgaacagctggcttgagcgccgggcagacttaccgtatgaaatc
gacgggattgtgattaaagtagacaatgtaaactttcaggagcaactagggtatacggcg
aaaagtccccgttgggcgatcgcttataaatttcctgcggaagaagtgatcacaacgttg
cttgatatcacattaaacgtaggaagaacgggggttgtcacaccgacggctgagttaaag
cccgtcacggtagcaggaacaaccgttaagcgcgcttcactgcataacgaggatcttatt
cgtgaaaaagacattcgcttaggtgattctgtcgttgtgaaaaaggcaggggacattatc
ccagaggtcgtgaacgttctcacagagcttcgaacgggagaagagcgaccattttctatg
ccaacccattgcccagaatgcggaagtgagctcgtccgcttggaaggagaagtggctctt
cgttgcatcaaccctcaatgcccagcacaaattcgcgaaggactcattcacttcgtctca
aggcaagcaatgaacattgatggattaggagaaaaggtgataactcaactgtttgaacat
gggttgattcataatgtagctgacctttataaattaaacaaggacgagctcctacaattg
gaacgaatgggtgaaaaatcagtaaacaatctcctcgcttcgattgaaacctcgaagaaa
agttcgcttgaacggcttttgtttggtttgggtattcgctttgtcggttcgaaggcggcg
aaaacgttagccatgcatttcccaaccatgacagaacttagacgggcgagctatgacgag
cttatcgctgtcaatgaaattggcgaaaaaatggctgcctccatcgtgagttattttgaa
aagcctgaagtgaacgaattaatcgatgagcttgcttcgctaggtgtcaacatgacgtac
aacggaccgaagccaatcggggaggaagaaatagcggacagtccgtttgcaggtaagacc
gtcgtactaactggaaaattacaagccttgacgcgcggggaagcaaaggagaaaattgaa
gcattgggtggaaaagtgacaggaagtgtaagtaaaaataccgatctattagtggccggt
gaagacgcaggatcaaagctaacaaaagcgaaagagcttaatatcgaaatatgggatgaa
gaagcgctagtgaaggcgatcagccactag
DBGET
integrated database retrieval system
