Bacillus haimaensis: ABN702_18335
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Entry
ABN702_18335 CDS
T10988
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bham Bacillus haimaensis
Pathway
bham03030
DNA replication
bham03410
Base excision repair
bham03420
Nucleotide excision repair
bham03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bham00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ABN702_18335 (ligA)
03410 Base excision repair
ABN702_18335 (ligA)
03420 Nucleotide excision repair
ABN702_18335 (ligA)
03430 Mismatch repair
ABN702_18335 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bham03032
]
ABN702_18335 (ligA)
03400 DNA repair and recombination proteins [BR:
bham03400
]
ABN702_18335 (ligA)
Enzymes [BR:
bham01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ABN702_18335 (ligA)
DNA replication proteins [BR:
bham03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ABN702_18335 (ligA)
DNA repair and recombination proteins [BR:
bham03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ABN702_18335 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ABN702_18335 (ligA)
MMR (mismatch excision repair)
DNA ligase
ABN702_18335 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ABN702_18335 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH
BRCT_2
RNA_pol_A_CTD
5_3_exonuc
HHH_3
HHH_8
Motif
Other DBs
NCBI-ProteinID:
XPD19853
LinkDB
All DBs
Position
complement(3612318..3614324)
Genome browser
AA seq
668 aa
AA seq
DB search
MERDKAEKRVQELHDILNRYNYEYHVLDKPSVSDAEYDSLLHELLTLEKDFPELQTPDSP
SQRVGGNILEMFNKVEHRTPMLSLGNAFNEEDLRDFDRRVRQAVGEEVTYVCELKIDGLA
VSLRYEDGVFTQGATRGDGTTGEDITMNLKTIRSIPLRLKDPVSIEVRGEAFMPKRSFEK
LNEAKLEREEEPFANPRNAAAGSLRQLDPKIAAQRNLDVYVYSLADAGETGIESHSEALN
YLEKIGFKTNKERKKCTSIEEVIEYVTAWHTKRPDLSYDIDGIVIKVDETEQQEQLGFTA
KSPRWAIAYKFPAEEVATKLLDIELNIGRTGVVTPTAILEPVRVAGTTVGRASLHNEDLI
REKDIKLGDYVIVKKAGDIIPEVVNVLVEKRTGEEKDFHMPTNCPECESELVRIEGEVAL
RCINPKCPAQIREGLIHFVSRNAMNIDGLGEKVISQLFRENLIEDVADIYKLTKEQLLGL
ERMGEKSADNLISSIEKTKENSMERLLFGLGIRLVGAKAAKTLAQEFGDMDRLASLTKEE
LTAIHEIGDKMADSIVAYFEQPEAMELMQELKSAGVNMEYKGPKKVSAEDVDSYFAGKTI
VLTGKLEEMSRNDAKAAIEQLGGKVTGSVSKNTHLVIAGEDAGSKLAKANELGIEVWNEA
QMLEEIQS
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggaaagagataaagcagaaaagcgggttcaagagcttcatgatattttgaatagatac
aactatgaatatcatgtattggacaagccatcggtttctgacgccgaatatgattccctt
ttgcatgagcttcttacactggaaaaggattttcctgagctgcagactcctgattcccca
tctcagcgtgtgggcggaaacattttggaaatgttcaacaaggtcgagcatcgtacaccg
atgctcagccttggcaatgcctttaacgaagaagacctgcgcgacttcgatcgccgggtc
agacaggctgtaggcgaggaggtaacttatgtctgtgagttgaaaatagatgggctggcc
gtgtccctccgctatgaggatggggtgtttacccaaggtgcgacccgtggagacggaaca
acaggggaagacatcacaatgaacctgaagacgatccgttccattcctttgcgcctgaag
gatcctgtatccatcgaagtgcgcggggaagcttttatgccgaaaaggtcgtttgaaaag
ctgaacgaggcaaagcttgagcgcgaagaggagccttttgcaaatcctcgcaacgcagca
gccggttccctgcgccaattagatcctaaaattgctgcacagcgcaatctcgatgtgtat
gtatacagcttggcggatgccggggagacaggcattgaatctcatagcgaagccttgaac
tacttggagaagatcggcttcaaaacgaacaaagagcgaaaaaaatgcacatcaatcgaa
gaagtgatcgaatatgtcacagcctggcacacaaaacgcccagacttgtcgtatgatata
gatggaattgtaattaaagttgatgaaacggagcagcaggaacagctcggattcacggcg
aaaagtcctcgctgggccattgcatacaagtttcccgccgaagaggtcgcgacaaagctg
ctcgatatcgaactgaatatcggaagaacgggagtcgttacgccgactgccatccttgag
cctgtccgtgtagcaggtacgaccgttggacgtgcgtccttacataacgaggatctgatc
cgcgaaaaggacataaagcttggcgattatgttattgtaaaaaaagcgggagacatcatc
cctgaagtagtaaacgtccttgtggaaaaacgcaccggagaagaaaaggacttccacatg
ccgacgaattgcccggaatgtgaaagtgagcttgtacgcattgaaggggaagtggcgctt
cgctgcatcaacccgaaatgtccggcgcagatccgggaaggattgatccattttgtttcc
cgaaatgccatgaatatcgatggcctcggggaaaaggtgatctcccagctgttccgtgaa
aatcttattgaagatgtggcagatatctataagctgacaaaagaacagcttcttggtctc
gagcgcatgggtgaaaaatctgcggataacctgatctcatccattgaaaagacgaaggaa
aactccatggagcgccttctattcggacttgggatccgactggttggagccaaagcggcg
aaaaccttggcccaggaatttggcgatatggatcgcctggcctcccttactaaggaagag
ctgactgctattcatgagatcggcgataaaatggcggattcgatcgtggcatatttcgag
cagcctgaagcgatggaattgatgcaggagctgaaaagtgccggtgtcaatatggaatac
aaaggtccgaagaaggttagtgcggaagatgtggattcctattttgcgggtaaaaccatt
gttctgacaggtaagctggaggagatgtcacgtaatgatgccaaggcggccatcgagcag
ctcggcggcaaggtgacaggcagtgtaagtaagaatacacacctcgtcattgcaggggaa
gatgcgggttcgaagctggcaaaggcgaatgaattgggcattgaagtatggaacgaggcg
caaatgcttgaagaaatacaatcataa
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integrated database retrieval system
