Bartonella harrusi: NMK50_06575
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Entry
NMK50_06575 CDS
T08485
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bhar
Bartonella harrusi
Pathway
bhar03030
DNA replication
bhar03410
Base excision repair
bhar03420
Nucleotide excision repair
bhar03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bhar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NMK50_06575 (ligA)
03410 Base excision repair
NMK50_06575 (ligA)
03420 Nucleotide excision repair
NMK50_06575 (ligA)
03430 Mismatch repair
NMK50_06575 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bhar03032
]
NMK50_06575 (ligA)
03400 DNA repair and recombination proteins [BR:
bhar03400
]
NMK50_06575 (ligA)
Enzymes [BR:
bhar01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NMK50_06575 (ligA)
DNA replication proteins [BR:
bhar03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NMK50_06575 (ligA)
DNA repair and recombination proteins [BR:
bhar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NMK50_06575 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NMK50_06575 (ligA)
MMR (mismatch excision repair)
DNA ligase
NMK50_06575 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NMK50_06575 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
DUF4796_N
HHH
Motif
Other DBs
NCBI-ProteinID:
UTO27895
UniProt:
A0ABY5ETZ5
LinkDB
All DBs
Position
complement(1377627..1379786)
Genome browser
AA seq
719 aa
AA seq
DB search
MKKETTKNLIALEAESELEWLAKEIARHDVLYNSNDQPEISDAEYDALRRRNAEIEALFP
ELIRADSPSCKIGAPVSEKFEKSVHAQAMLSLDNAFSSEDVREFVERIRRFLRLPETQIL
EITAEPKIDGLSLSLRYEEGRLVRAATRGDGYVGENVTVNAQTITDIPQILQEKFPDILE
VRGEVYMGREDFQVLNKRQQEKGKLTFANPRNAAAGSLRQLDSRITASRKLKFFAYACGE
VSEIFAKSQMEMMKKLKEYGFIINPLTKVFKTVEEMISYYHAVEERRHSLSYDIDGIVYK
VNDLMLQTRLGFVSRSPRWAIAHKFPAEKAIALLEAIHIQVGRTGALTPVAHLAPITVGG
VVVTNASLHNEDYIKGIGHKGEPIREGRDIRVGDTVIVQRAGDVIPQIVDIVIEKRPKNV
SAFVFPHLCPACGSHAVREVGEAVRRCTGGLICPAQAIERMRHFVSRNAFDIEGLGKKQV
EFFFHVQDETLCIRTPADIFTLQRRQEKSLTRLENMEGFGIVSVRKLYDAINARREIPLS
RFLFALGIRYVGEVNARRLARAYQNYTTFETAVMAAKMSCDGENEKGNEAWMELTNIEGI
GSQVASAIIDFYQETHNREVLSILLKEVTPLDEETLMTDTSPVIGKVIVFTGTLARMSRD
EAKALAERLGAKTSGSLSRKTDLLVVGAGAGSKLAKAQELGVEAIDEETWLQLIEGYYV
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaggaaacaacaaaaaacttaattgctcttgaagcagaaagtgaattagaatgg
ttggcaaaagaaattgcccgtcatgatgtcctttataatagcaacgatcagcctgaaatt
tctgatgcagaatatgatgctcttcgtcgtcgtaatgcagaaattgaagccctttttcct
gagctcattcgtgcagattctccttcctgtaaaattggagctccggtttctgaaaagttt
gaaaaatctgttcatgcacaggcaatgctttcacttgataatgcatttagctctgaagat
gttcgtgagtttgttgagcgcattcgtcgttttttacggctgccagaaacacagatattg
gaaataactgctgagcccaaaattgatggtttatctttgtctttgcgctatgaagaagga
agacttgtgcgggcagcaacacgtggtgatggatatgtcggtgaaaatgttacagtgaat
gcacaaacaattaccgatattccgcagatcttgcaggaaaaatttcctgatattcttgag
gtgcgtggtgaagtttatatgggacgggaggatttccaagtactgaacaagagacaacaa
gaaaaaggaaagttgacttttgctaatcctagaaatgcagcagctggttcgctacgtcag
cttgattcacggataaccgcaagtagaaagcttaaattttttgcttatgcttgtggtgaa
gtgagtgaaatctttgcaaaaagccaaatggagatgatgaaaaagttaaaagaatatggc
tttattatcaatccattaacgaaggttttcaaaacagtagaagagatgatttcctattat
catgctgtcgaagaacgccgtcattcgttaagctatgatatagatgggatcgtttacaag
gttaatgatttaatgctccagacccgtttgggatttgtctctcgttcaccacgttgggca
attgcgcataaatttccagcagaaaaagcgatagcgcttttagaagctattcatattcaa
gttggtcgaactggagcactaacgcctgttgcacatcttgctcctattactgttggcggt
gtggtggttactaatgcaagtttgcataatgaggattatattaagggaattggtcataag
ggcgagccaattcgtgaagggcgtgatatccgtgttggtgatacagtgattgtacaacgt
gctggtgatgtgattcctcagattgttgatattgttattgaaaaacgtccaaaaaatgtt
tctgcttttgtctttccgcatctgtgtccagcttgtgggagccatgctgtccgtgaggtg
ggggaagctgtgcgtcgatgcacaggtgggcttatttgtccagcacaagcgattgagcgt
atgcgtcatttcgtttcgcgtaatgcctttgatattgaaggacttgggaaaaaacaggtg
gagttcttttttcatgttcaagatgaaacgctttgtattcgtacaccagccgatattttt
actttacaacggcgacaagaaaaatctttgacgcgtttagagaatatggaaggttttggt
attgtttcagttcgtaaactttatgatgccattaatgcacgccgtgaaattcctttaagt
cgttttttatttgcactcggaattcgttatgttggagaggttaatgcacggcgtcttgca
cgcgcttatcaaaattatacaacatttgaaactgctgtgatggcagctaagatgtcgtgt
gatggggaaaatgaaaaaggcaatgaggcttggatggagcttactaatattgaaggaatt
ggatcacaggtagcgagcgcaattattgatttctatcaagaaacgcataaccgtgaggtt
ttgtctatcttacttaaggaagttacacctcttgatgaggaaactctcatgacagatact
tcacccgtaataggaaaggtcattgtttttacaggaactttggcgcgcatgtcccgcgat
gaagcaaaagcattggcagaacgattaggtgcaaaaacctccggttcactttctagaaaa
actgatcttcttgttgttggagctggagcaggatcgaagctagccaaagcgcaagagtta
ggtgttgaggctatcgatgaagagacttggctgcaattgattgagggatattatgtttag
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