Brachyspira hyodysenteriae ATCC 27164: BHYOB78_06205
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Entry
BHYOB78_06205 CDS
T04742
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bhd
Brachyspira hyodysenteriae ATCC 27164
Pathway
bhd03030
DNA replication
bhd03410
Base excision repair
bhd03420
Nucleotide excision repair
bhd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bhd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BHYOB78_06205
03410 Base excision repair
BHYOB78_06205
03420 Nucleotide excision repair
BHYOB78_06205
03430 Mismatch repair
BHYOB78_06205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bhd03032
]
BHYOB78_06205
03400 DNA repair and recombination proteins [BR:
bhd03400
]
BHYOB78_06205
Enzymes [BR:
bhd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BHYOB78_06205
DNA replication proteins [BR:
bhd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BHYOB78_06205
DNA repair and recombination proteins [BR:
bhd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BHYOB78_06205
NER (nucleotide excision repair)
GGR (global genome repair) factors
BHYOB78_06205
MMR (mismatch excision repair)
DNA ligase
BHYOB78_06205
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BHYOB78_06205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
RNA_ligase
HHH_3
UPF0758_N
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
ANN63470
UniProt:
A0A3B6VRE0
LinkDB
All DBs
Position
225677..227668
Genome browser
AA seq
663 aa
AA seq
DB search
MNIEEARKKIEQLTETINYHNKLYYTDDNPEIEDYEYDKLFRELENLEREFPELKKDDSP
TNKVGGTVLEKFEKFEHPIAMYSLSNVMNEEEFLEFDNRMQKELNQSKIKYTVENKFDGL
ALELIYEKGKLTVASTRGDGQVGENVTNNVKMMSNVPKSIKEKKKLIVRGEALITKKDFE
ALNKEREELEEIPFANARNAASGGLRQLDSAESKKRRLKFFAYQIANYKDFDLTNEYKSM
ELLSELGFTVEGVHPNIDAKKVLETYYDIQEKRSKMDYEIDGLVIKVDDVKHQEKLGFLS
RAPRFAVAFKFKPEEKETVLKNIEVQVGRTGALTPVAKLEPVQVGGVTVSNVTLHNPNEI
KSKDIRIGDTVVVIRSGDVIPKITRVVLEKRPADSKPFEFPKKCPVCGGDTAVTDGDVIV
RCINEECPSKITRYIEYFVSKPAMNMERIGKEWIAVFTKSGLVKTPADLYKITRDDLFKF
ERMGEKLAGYMLESIENSKNTTLKRFIYALGIRQVGETTADLLAKYFTSIENFKKATIDD
LQNIEGIGEISAKSIYDFLHNEKTLKLIDDLLASGVNPVFEKVVTVESPLTGKNVVITGS
IEGFTRNSAKEAAERLGATVQSAVSKNTNILIVGEKAGSKLKKAQDLGVEIMEADEFIKL
ANS
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgaacatagaagaagctagaaaaaaaatagaacaattaacagaaactattaattaccat
aataaactttattatacagatgataaccctgaaatagaagactatgaatatgataaactt
ttcagagagttggaaaatcttgaaagagagtttccagaattaaaaaaagatgacagccct
actaataaagtgggaggtactgtattagaaaagtttgagaaatttgaacaccctattgct
atgtactcgctttctaatgttatgaatgaagaggagtttttggaatttgataatagaatg
caaaaagagcttaatcaaagtaagattaaatatactgttgaaaataaatttgacggactt
gctttagagcttatttacgaaaaaggaaaactcacagtagcaagcacaagaggcgacgga
caggttggtgagaatgttactaataatgttaaaatgatgagcaatgttcctaaaagcata
aaagagaaaaagaaacttattgtaagaggcgaagcattaataacaaaaaaagattttgag
gcattaaataaagagagagaagagcttgaagagataccttttgcaaacgctagaaatgca
gcttccggaggattaagacaattagacagtgctgaaagtaaaaagagaagattaaaattc
tttgcttatcagattgccaattataaagattttgatttaactaatgaatataaatcaatg
gagttattgtcagaattaggattcacagttgaaggcgttcacccaaacattgatgctaaa
aaagtattagaaacttattatgatatacaagaaaaaagaagcaaaatggattatgagatt
gacggacttgtaataaaagttgatgatgttaagcatcaggagaaattaggatttttatca
agagctccaagatttgctgtagcattcaaattcaagcctgaagaaaaagaaacagtatta
aaaaatattgaggttcaagtaggacgtaccggagcattaacacctgttgctaaattagag
cctgttcaagttggaggggttactgtttcaaatgttacacttcataaccctaatgaaatt
aaatcaaaagacataagaatcggcgatactgttgttgttattcgttcaggtgatgttata
ccaaagattacaagagtagtattagaaaaacgtcctgccgacagtaagcctttcgagttc
cctaaaaaatgtcctgtttgcggaggtgatactgcagtaactgacggcgatgtaattgta
agatgtattaatgaagaatgcccaagcaagataactagatacatagaatattttgtttca
aaacccgctatgaatatggagagaataggaaaagagtggattgcagtatttacaaaaagc
ggacttgttaaaactccggctgatctttacaagataacaagagatgatttatttaaattt
gaaagaatgggagaaaaattggcaggatacatgcttgaatctattgagaacagtaaaaac
actactttaaaaagatttatatatgcattaggtattcgtcaggttggtgaaactactgct
gatttactagctaaatatttcacgtcaatagagaatttcaaaaaagctactatcgatgat
ttacaaaatattgaaggtataggtgaaattagtgctaaaagtatttacgatttccttcat
aatgaaaagacattaaaattaatcgatgatttacttgcatcaggagttaatcctgtattt
gaaaaagttgtaacagtggaatctcctcttactggtaagaatgttgtaataacaggttca
atagaaggttttacaaggaattctgcaaaagaggctgctgagagattaggtgcaactgtt
caatctgctgtatccaaaaacacaaacattttgattgtaggtgagaaagcaggaagcaaa
cttaaaaaagctcaggatttaggagtagagataatggaagctgacgagtttataaagctt
gcaaattcataa
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