KEGG   Bacteroides heparinolyticus: C3V43_03285
Entry
C3V43_03285       CDS       T05405                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
bhf  Bacteroides heparinolyticus
Pathway
bhf03030  DNA replication
bhf03410  Base excision repair
bhf03420  Nucleotide excision repair
bhf03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:bhf00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    C3V43_03285
   03410 Base excision repair
    C3V43_03285
   03420 Nucleotide excision repair
    C3V43_03285
   03430 Mismatch repair
    C3V43_03285
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bhf03032]
    C3V43_03285
   03400 DNA repair and recombination proteins [BR:bhf03400]
    C3V43_03285
Enzymes [BR:bhf01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     C3V43_03285
DNA replication proteins [BR:bhf03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     C3V43_03285
DNA repair and recombination proteins [BR:bhf03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     C3V43_03285
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     C3V43_03285
   MMR (mismatch excision repair)
    DNA ligase
     C3V43_03285
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      C3V43_03285
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD PTCB-BRCT HHH BRCT_2 HHH_3 RNA_pol_A_CTD rve_2 DUF1266 Auto_anti-p27 HHH_8
Other DBs
NCBI-ProteinID: AVM56887
UniProt: A0A2R3MPY9
LinkDB
Position
799677..801674
AA seq 665 aa
MTAKEKIDSLRAELHRHNYNYYVLNAPEISDKEFDDMMRELQDMEQRYPEYQDDNSPTMR
VGSDLNKNFLQVVHKYPMLSLGNTYSKGEVTDFYERVKKLLNEDFEICCELKYDGTSISL
TYEDGKLIRAVTRGDGEKGDDVTDNVKTIRTIPLVLHGNYPRTFEIRGEILMPWMVFEEL
NREKEAREEPLFANPRNAASGTLKLQNSTIVASRKLDAYLYYLLGEDLPSDGHYENLQAA
SEWGFKTSEHTKKVRSLNEIFEYIDYWNTERKNLPVATDGIVLKVNSLRQQRNLGFTAKS
PRWAIAYKFQAERALTRLNKVSYQVGRTGAVTPVANLDPVLLSGTIVKRASLHNADIIDG
LDLHIGDMVYVEKGGEIIPKITGVDKDARSMLIGEKVKFITHCPECGSKLIRYEGEAAHY
CPNETACLPQIKGKIEHFISRKAMDIDGLGPETVDAFYRLGLIKDTADLYSLRIDDIKNL
ERMGEKSAENIINGIAASKEVPFERVLFALGIRFVGETVAKKIAKSFADIEELENADLEK
LKNIDEIGEKIARSIVAYFSSPSNRELVEHLRESGLQFCRKEEDMSEHTDKLSGQSIVIS
GVFTHHSRDEYKELIEKNGGKNVGSISSKTSFILAGDNMGPAKLEKAQKLGVRIVSEDEF
LTLIS
NT seq 1998 nt   +upstreamnt  +downstreamnt
atgactgcaaaagaaaaaatagacagccttcgtgccgaactgcatcggcataactataat
tattatgtactcaatgctccggaaatttcagataaagagtttgatgatatgatgcgcgag
ctacaagatatggagcaaagatatcctgaatatcaagacgataactcacctacaatgcgt
gtagggagcgacttaaacaagaacttcttgcaggtggtgcataaatatcctatgctttca
ttaggcaatacatactccaaaggtgaagtaaccgatttttacgaaagagtgaaaaagttg
ctgaacgaagatttcgaaatatgctgtgaattgaaatacgacggcacttccatctcgctg
acctacgaagatggcaagttgatacgtgccgtcacccgaggtgacggagaaaaaggcgat
gatgtgacagataatgtaaaaacaatccgcaccattccgttggttcttcatggcaattat
ccgagaacattcgaaatcagaggggaaattctaatgccatggatggtttttgaagaatta
aaccgtgagaaagaagctcgcgaagaacctcttttcgccaatccgcgcaatgcggcttcg
ggcactctgaagctacaaaactctaccattgtggcttctcgtaagctggacgcctacctt
tactatctcttaggagaagatctgccttccgacggtcattatgaaaatctgcaagctgca
tctgagtggggatttaaaacgtctgaacacacgaaaaaggtgcgtagcttgaatgaaatc
tttgaatacatcgattattggaacaccgaacgtaaaaacctccctgtagctacggatggt
attgtgctaaaggtcaacagtttgagacaacaaagaaatcttggtttcacggcaaaatct
ccccgttgggccatagcctataaattccaggcagaacgcgccctgacacgcttgaataaa
gtcagctatcaggtggggcgtaccggtgctgtgactccggtagccaatcttgacccggta
ctgctatcaggcaccattgtaaaaagggcttctctacataatgcagacattattgatgga
ttggatttacacataggtgatatggtgtacgtggaaaaaggcggtgaaattattcccaaa
ataaccggagttgataaagatgcccgcagcatgcttatcggtgaaaaagtgaaatttatc
acccattgccccgaatgtggcagcaaattgatacgctatgaaggcgaagctgcccactat
tgccctaatgaaacagcttgcctaccacagattaaagggaaaatagagcattttatcagt
cgtaaagccatggatatagacgggttagggccggaaaccgtagatgcgttctatcgattg
ggattgataaaagatactgccgacctatacagccttcggattgacgacataaagaacctc
gaacggatgggcgagaaatcagcagagaacatcatcaatggcatcgcggcaagcaaagaa
gttccttttgaaagagtactctttgcattgggtatacggtttgtgggcgaaacagtagcc
aagaaaatagccaaatcgtttgcagacattgaagaattggagaatgccgatcttgaaaaa
ctgaaaaacatcgatgaaatcggtgaaaaaatagcccgaagcattgttgcttacttctcc
agcccatcaaacagagagctggtagaacacctgagagaaagtggcttacagttctgccga
aaagaagaggatatgagcgaacatactgataaactgtccgggcaatccattgtaatcagc
ggtgtattcactcaccattcaagagacgagtacaaagagctgattgagaaaaatggaggg
aaaaatgttggtagcatctcatccaagaccagtttcatattggccggtgacaatatggga
cctgctaaattagaaaaagcacagaaattaggagtaaggatagtgagcgaagatgagttt
ttgacgctgatttcctaa

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