Bacteroides heparinolyticus: C3V43_03285
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Entry
C3V43_03285 CDS
T05405
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bhf
Bacteroides heparinolyticus
Pathway
bhf03030
DNA replication
bhf03410
Base excision repair
bhf03420
Nucleotide excision repair
bhf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bhf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
C3V43_03285
03410 Base excision repair
C3V43_03285
03420 Nucleotide excision repair
C3V43_03285
03430 Mismatch repair
C3V43_03285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bhf03032
]
C3V43_03285
03400 DNA repair and recombination proteins [BR:
bhf03400
]
C3V43_03285
Enzymes [BR:
bhf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
C3V43_03285
DNA replication proteins [BR:
bhf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
C3V43_03285
DNA repair and recombination proteins [BR:
bhf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
C3V43_03285
NER (nucleotide excision repair)
GGR (global genome repair) factors
C3V43_03285
MMR (mismatch excision repair)
DNA ligase
C3V43_03285
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
C3V43_03285
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
HHH_3
RNA_pol_A_CTD
rve_2
DUF1266
Auto_anti-p27
HHH_8
Motif
Other DBs
NCBI-ProteinID:
AVM56887
UniProt:
A0A2R3MPY9
LinkDB
All DBs
Position
799677..801674
Genome browser
AA seq
665 aa
AA seq
DB search
MTAKEKIDSLRAELHRHNYNYYVLNAPEISDKEFDDMMRELQDMEQRYPEYQDDNSPTMR
VGSDLNKNFLQVVHKYPMLSLGNTYSKGEVTDFYERVKKLLNEDFEICCELKYDGTSISL
TYEDGKLIRAVTRGDGEKGDDVTDNVKTIRTIPLVLHGNYPRTFEIRGEILMPWMVFEEL
NREKEAREEPLFANPRNAASGTLKLQNSTIVASRKLDAYLYYLLGEDLPSDGHYENLQAA
SEWGFKTSEHTKKVRSLNEIFEYIDYWNTERKNLPVATDGIVLKVNSLRQQRNLGFTAKS
PRWAIAYKFQAERALTRLNKVSYQVGRTGAVTPVANLDPVLLSGTIVKRASLHNADIIDG
LDLHIGDMVYVEKGGEIIPKITGVDKDARSMLIGEKVKFITHCPECGSKLIRYEGEAAHY
CPNETACLPQIKGKIEHFISRKAMDIDGLGPETVDAFYRLGLIKDTADLYSLRIDDIKNL
ERMGEKSAENIINGIAASKEVPFERVLFALGIRFVGETVAKKIAKSFADIEELENADLEK
LKNIDEIGEKIARSIVAYFSSPSNRELVEHLRESGLQFCRKEEDMSEHTDKLSGQSIVIS
GVFTHHSRDEYKELIEKNGGKNVGSISSKTSFILAGDNMGPAKLEKAQKLGVRIVSEDEF
LTLIS
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgactgcaaaagaaaaaatagacagccttcgtgccgaactgcatcggcataactataat
tattatgtactcaatgctccggaaatttcagataaagagtttgatgatatgatgcgcgag
ctacaagatatggagcaaagatatcctgaatatcaagacgataactcacctacaatgcgt
gtagggagcgacttaaacaagaacttcttgcaggtggtgcataaatatcctatgctttca
ttaggcaatacatactccaaaggtgaagtaaccgatttttacgaaagagtgaaaaagttg
ctgaacgaagatttcgaaatatgctgtgaattgaaatacgacggcacttccatctcgctg
acctacgaagatggcaagttgatacgtgccgtcacccgaggtgacggagaaaaaggcgat
gatgtgacagataatgtaaaaacaatccgcaccattccgttggttcttcatggcaattat
ccgagaacattcgaaatcagaggggaaattctaatgccatggatggtttttgaagaatta
aaccgtgagaaagaagctcgcgaagaacctcttttcgccaatccgcgcaatgcggcttcg
ggcactctgaagctacaaaactctaccattgtggcttctcgtaagctggacgcctacctt
tactatctcttaggagaagatctgccttccgacggtcattatgaaaatctgcaagctgca
tctgagtggggatttaaaacgtctgaacacacgaaaaaggtgcgtagcttgaatgaaatc
tttgaatacatcgattattggaacaccgaacgtaaaaacctccctgtagctacggatggt
attgtgctaaaggtcaacagtttgagacaacaaagaaatcttggtttcacggcaaaatct
ccccgttgggccatagcctataaattccaggcagaacgcgccctgacacgcttgaataaa
gtcagctatcaggtggggcgtaccggtgctgtgactccggtagccaatcttgacccggta
ctgctatcaggcaccattgtaaaaagggcttctctacataatgcagacattattgatgga
ttggatttacacataggtgatatggtgtacgtggaaaaaggcggtgaaattattcccaaa
ataaccggagttgataaagatgcccgcagcatgcttatcggtgaaaaagtgaaatttatc
acccattgccccgaatgtggcagcaaattgatacgctatgaaggcgaagctgcccactat
tgccctaatgaaacagcttgcctaccacagattaaagggaaaatagagcattttatcagt
cgtaaagccatggatatagacgggttagggccggaaaccgtagatgcgttctatcgattg
ggattgataaaagatactgccgacctatacagccttcggattgacgacataaagaacctc
gaacggatgggcgagaaatcagcagagaacatcatcaatggcatcgcggcaagcaaagaa
gttccttttgaaagagtactctttgcattgggtatacggtttgtgggcgaaacagtagcc
aagaaaatagccaaatcgtttgcagacattgaagaattggagaatgccgatcttgaaaaa
ctgaaaaacatcgatgaaatcggtgaaaaaatagcccgaagcattgttgcttacttctcc
agcccatcaaacagagagctggtagaacacctgagagaaagtggcttacagttctgccga
aaagaagaggatatgagcgaacatactgataaactgtccgggcaatccattgtaatcagc
ggtgtattcactcaccattcaagagacgagtacaaagagctgattgagaaaaatggaggg
aaaaatgttggtagcatctcatccaagaccagtttcatattggccggtgacaatatggga
cctgctaaattagaaaaagcacagaaattaggagtaaggatagtgagcgaagatgagttt
ttgacgctgatttcctaa
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