Brachybacterium halotolerans subsp. kimchii: Bra3105_03685
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Entry
Bra3105_03685 CDS
T08518
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bhh
Brachybacterium halotolerans subsp. kimchii
Pathway
bhh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bhh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Bra3105_03685 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bhh03400
]
Bra3105_03685 (mfd)
Enzymes [BR:
bhh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Bra3105_03685 (mfd)
DNA repair and recombination proteins [BR:
bhh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Bra3105_03685 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
UEJ83426
LinkDB
All DBs
Position
complement(814986..818600)
Genome browser
AA seq
1204 aa
AA seq
DB search
MTASNAPTPPTPSAPPAPSAPLAPLLDLVASGEDLTRLRELVAPDPAASDVPVEDSATVA
PTSLVPFAVADLARSATPDSPLVVLTATTRAAEDARAALEAMVGTTHVAELPAWETLPHE
RLSPRADTVARRLQTLRRIAHPETEQGVSVLLLPVRSLLQPIAKGLGDLRAVRARVGDDY
PLERLEQDLVDAAYVRTDMVEKRGEFAVRGGILDVFPPTEPHPVRVDLFGDEVDEVRYFS
IADQRSLESVPHGLDAAPCREILLSDTVRERARDMAEKLPGVRDMLERIAAGIAVDGMES
LSPVLVGEMEQVVDVLPADSRFLVIDPERVRARGAELVSTTDEFLAAAWSSAAAGGGLPI
DVGEASFVPLPDVREHARSRGQRWHTLAPFGLETDVDLTARAVNHPGYSGRGEDIAKDLG
ARRTEGWRIVVTMTGSGGARHAAESLEEQGVPARYVHPLDVPPAPGEPIVTVGPFADGLV
DESLRLMVVAERDVTGKTGQRRSGGERRIPSRRRNVVDPLQLRPGDHVVHAHHGVGRFVE
MTSRTVGSGAKATTREYLVIEYAASKKGQPGDRLYVPSDQLDQVTKYVGGEDPTVNRMGG
ADWAKTKSRARKAIREIADELVRLYSARQSAPGHSFGPDTPWQRELEDSFEFVETPDQLS
TIDDVKGDMEKAVPMDRLILGDVGYGKTEIAVRAAFKAVQDGKQVAVLAPTTLLSQQHLD
TFTERFTGFPVTVRGLSRFQSDADSQATIEGLRDGSVDVVIGTHRLITGQVRFKDLGLLI
IDEEQRFGVEHKETLKAMRTNVDVLSMSATPIPRTLEMAVTGIREMSTLATPPEERHPVL
TYVGAEDDKQITAAIRRELLREGQVFFIHNRVEDIDATAQRLRELVPDARVQVAHGKMNE
NQLERVIVDFWEKEFDVLVCTTIVETGLDIANANTLIVENADRFGLSQLHQLRGRVGRSS
ERAYAYFLYDGSKPLTETASDRLTTLATNTDLGAGMQVAMKDLEIRGAGNLLGGEQSGHI
AGVGFDLYVRMVGEAVAAFRGESTAPTKDVKVELPLDAHVPHDYIASERLRLEAYSKLSG
ASDPATIEEVRAELTDRYGAPPAAVEVLLDVARFRLECRDAGIEEVQAQGKMIRFAHLEL
PDSVAMRMKRLYPGTMLKPAVRQVLVPRPTTSRVGGTELRDHELLAWARKVLGVLKPAPA
EDAA
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcctcgaacgcgccgaccccgccgaccccgtcggccccgccggccccgtccgcc
ccgctcgccccgctgctcgacctcgtcgcgagcggtgaggacctcacgcgcctgcgcgag
ctcgtcgcccccgatccggccgcctccgacgtccccgtcgaggactcggcgaccgtcgcc
cccacctccctggtgcccttcgccgtcgccgacctcgcgcgcagcgccacccccgactcg
cccctcgtcgtgctcaccgccacgacccgcgcggccgaggacgcccgcgccgcgctcgag
gcgatggtcggcacgacgcacgtggccgagctgcccgcctgggagaccctcccgcacgag
cggctgtccccgcgcgccgacaccgtcgcccgccgcctgcagaccctgcggcgcatcgcc
cacccggagaccgagcagggcgtcagcgtgctcctgctcccggtgcgcagcctgctgcag
ccgatcgcgaagggcctcggggacctgcgggccgtgcgcgcccgcgtcggcgacgactac
ccgctcgagcgcctcgagcaggacctcgtcgacgccgcgtacgtgcgcaccgacatggtc
gagaagcgcggcgagttcgccgtgcgcggcggcatcctcgacgtcttcccgcccaccgag
ccccaccccgtgcgcgtggacctgttcggcgacgaggtcgacgaggtccggtacttctcc
atcgccgaccagcgctccctggagtcggtgccccacgggctcgacgccgcgccgtgccgc
gagatcctgctcagcgacaccgtgcgcgagcgcgcccgggacatggcggagaagctcccg
ggcgtgcgggacatgctcgagcggatcgccgccggcatcgccgtggacggcatggagtcg
ctcagcccggtgctggtgggggagatggagcaggtcgtcgacgtgctccccgcggactcc
cgcttcctcgtgatcgacccggagcgcgtgcgcgcacgcggggcggagctggtctccacg
accgacgagttcctcgccgccgcctggtcgagcgccgccgccggcggcgggctgcccatc
gacgtgggcgaggcgagcttcgtgccgctcccggacgtgcgggagcacgcacgctcccgc
ggccagcgctggcacaccctcgcgcccttcggcctcgagaccgacgtcgacctcaccgcg
cgcgccgtgaaccaccccggctactccggtcgcggggaggacatcgccaaggatctcggc
gcccgccgcaccgagggctggcggatcgtggtcacgatgaccggcagcggcggcgcccgc
cacgccgccgaatcgctcgaggagcagggcgtgcccgcccgctacgtccacccgctcgac
gtgccgcccgcgccgggggagccgatcgtcaccgtcggccccttcgccgacggcctcgtc
gacgagtccctgcggctcatggtggtcgccgagcgcgacgtcaccggcaagaccggccag
cggcgcagcgggggcgagcggcgcatcccctcgcgccgccgcaacgtcgtggaccccctg
cagctgcgcccgggcgaccatgtcgtccacgcgcaccacggcgtcggccgcttcgtcgag
atgaccagccgcaccgtcggctccggcgccaaggcgaccacccgcgagtacctcgtcatc
gagtacgcggcctcgaagaaggggcagccgggggacaggctctacgtccccagcgaccag
ctcgaccaggtcaccaagtacgtcggcggcgaggaccccacggtcaaccgcatgggcggg
gccgactgggcgaagaccaagtcgagggcccgcaaggcgatccgcgagatcgccgacgag
ctcgtgcgcctgtactccgcgcgtcagagcgcgcccggccactccttcggccccgacacg
ccctggcagcgcgagctcgaggactccttcgagttcgtcgagacccccgatcagctctcc
acgatcgacgacgtcaagggcgacatggagaaggccgtcccgatggaccgcctgatcctc
ggcgacgtcggctacggcaagacggagatcgcggtgcgcgccgccttcaaggccgtccag
gacggcaagcaggtcgccgtgctcgcgcccacgaccctgctctcccagcagcacctggac
accttcaccgagcgcttcacgggcttccccgtgaccgtgcgggggctctcccgcttccag
tccgacgccgactcccaggccaccatcgagggtctgcgcgacggcagcgtcgacgtggtc
atcggcacccaccgcctgatcaccgggcaggtgcggttcaaggacctgggcctgctgatc
atcgacgaggagcagcgcttcggcgtcgagcacaaggagaccctcaaggcgatgcgcacg
aacgtggacgtgctgtccatgtccgcgacgccgatcccgcgcaccctcgagatggccgtg
accggcatccgcgagatgtccacgctcgcgaccccgcccgaggagcgacaccccgtgctc
acctacgtgggcgcggaggacgacaagcagatcaccgccgcgatccgccgcgagctgctg
cgggagggccaggtcttcttcatccacaaccgcgtcgaggacatcgacgccaccgcccag
cggctgcgcgagctcgtgcccgacgcgcgcgtgcaggtcgcccacggcaagatgaacgag
aaccagctcgagcgggtcatcgtcgacttctgggagaaggagttcgacgtgctcgtgtgc
accacgatcgtcgagaccggcctggacatcgccaacgccaacacgctgatcgtcgagaac
gccgaccgcttcggcctctcccagctccaccagctgcgcggccgcgtgggccgctcgagc
gagcgcgcctacgcgtacttcctctacgacgggtcgaagcccctcacggagaccgcctcg
gaccgcctcaccacgctggccaccaacaccgatctcggcgcgggcatgcaggtcgccatg
aaggacctcgagatccgcggcgccggcaacctgctgggcggcgagcagtccggccacatc
gcgggcgtcggcttcgacctctacgtgcggatggtgggggaggccgtcgcggccttccgc
ggcgagtccaccgcgcccacgaaggacgtcaaggtcgagctgccgctcgacgcccacgtg
ccccacgactacatcgcctccgagcggctgcgcctcgaggcctactcgaagctctccggc
gcgagcgacccggcgaccatcgaggaggtccgcgccgagctcacggaccgctacggagcg
ccgccggccgcggtcgaggtgctgctggacgtggcccgcttccgcctggagtgccgcgac
gcgggcatcgaggaggtccaggcccagggcaagatgatccgcttcgcccacctcgagctg
cccgactcggtggccatgcgcatgaagcgcctgtacccgggcaccatgctcaagcccgcc
gtgcgccaggtgctcgtcccgcggccgacgacctcgcgcgtgggcggcaccgagctgcgc
gaccacgagctgctcgcctgggcccggaaggtgctcggcgtgctgaagccggctccggcg
gaggacgcggcgtga
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