Brachybacterium halotolerans subsp. kimchii: Bra3105_07960
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Entry
Bra3105_07960 CDS
T08518
Name
(GenBank) Fpg/Nei family DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
bhh
Brachybacterium halotolerans subsp. kimchii
Pathway
bhh03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
bhh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Bra3105_07960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bhh03400
]
Bra3105_07960
Enzymes [BR:
bhh01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
Bra3105_07960
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Bra3105_07960
DNA repair and recombination proteins [BR:
bhh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Bra3105_07960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Zn_ribbon_TFIIB
Zn_ribbon_8
DUF7577
Motif
Other DBs
NCBI-ProteinID:
UEJ84227
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All DBs
Position
1725445..1726299
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AA seq
284 aa
AA seq
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MPELPELDAVVAQIDRLLASRRLHGADVAAISVLKTADPPLADLTGRELSGVSRRGKHLL
LDLEGTALVMHLARAGWLRHHAQAPAGAPGPRKGPLAVRMVWDDGTALDVTEQGTRKAVA
LWATTAPEELETLARLGPEADALDEAAFTSICAGTHAHLKTVLTDQTLMAGIGNAWSDEV
LHTARLSPFAAADGLDREAAARLHRALREVLDRAAEGLRDLPLDRIKRAKKALLRVHGRA
GEDCPTCGTRIAEVSFAERSLQYCPTCQTGGRRLSDRRMDRLLR
NT seq
855 nt
NT seq
+upstream
nt +downstream
nt
atgccggaactgcccgagctcgacgccgtcgtcgcgcagatcgaccgactcctcgcctcg
cgtcgtctgcacggcgcggacgtcgccgccatcagcgtgctgaagacggcggaccctccc
ctggccgatctcacgggccgcgagctctccggggtcagtcgccgcggcaagcacctcctg
ctggatctcgaggggaccgcgctggtcatgcatctggcgcgcgcgggctggctgcgccac
catgcgcaggctcctgcgggtgcgccggggccgcgcaagggcccgctcgccgtgcgcatg
gtgtgggacgacggcaccgccctggacgtcaccgagcagggcacccgcaaggccgtcgcg
ctgtgggccaccacggccccggaggagctggagaccctggcccggctgggaccggaggcc
gacgctctcgacgaggccgccttcacgagcatctgcgccggcacccacgcgcacctgaag
acggtcctcaccgaccagaccctgatggccggcatcggcaacgcctggtccgacgaggtc
ctccacaccgcgcgcctctcccccttcgccgcggccgacggcctagatcgcgaggcggcc
gcgcgtctgcaccgagccctgcgcgaggtgctggaccgcgccgcggaggggctgcgggat
ctgccgctggaccgcatcaagcgggcgaagaaggcgctgctgcgcgtgcacggcagagct
ggggaggactgccccacatgcgggacgaggatcgcggaggtttcgttcgccgagcgctcc
ctgcagtactgccccacctgccagaccggcggtcggcgtctgagcgaccgccggatggac
cgcctgctgcgctga
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