Benincasa hispida (wax gourd): 120079749
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Entry
120079749 CDS
T07258
Name
(RefSeq) 110 kDa U5 small nuclear ribonucleoprotein component CLO
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
bhj
Benincasa hispida (wax gourd)
Pathway
bhj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bhj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120079749
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bhj03041
]
120079749
Spliceosome [BR:
bhj03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
120079749
Complex C
U5 SnRNP specific factors
120079749
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
MMR_HSR1
Roc
EF-G_D2
Septin
Ras
SOI
Motif
Other DBs
NCBI-GeneID:
120079749
NCBI-ProteinID:
XP_038890041
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All DBs
Position
6:complement(51776894..51783467)
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AA seq
987 aa
AA seq
DB search
MDDSLYDEFGNYIGPEIDSDKDSDIEDEDEDLMEKPDEDEGASDGEDAGPSNGWITTSND
VDMDNQIVLAEDKKYYPTAEEVYGDDVETLVMDEDELPLEQPIIKPVRNVKFEVGVKDSR
TYVSNQFLVGLMSNPTLVRNVALVGHVHHGKTVFMDMLVEQTHHMSTFDIKGEKHMRYTD
TRIDEQERGISIKAVPMSLVLEDGNSKSYLCNIMDTPGHTNFSDEMTAALRLADGAVLIV
DAAEGVMVNTERGIRHAIQERLPIVVVINKVDRLITELKLPPRDAYYKLRHTLEIINNHI
SAASSTAGNVQVIDPAAGNVCFASATAGWSFTLQSFAKLYVKLHGIPFDADKFASRLWGD
YYYHSDTRTFKKKQPASGGERSFVQFVLEPLYKIYSQVIGEHRKSVETTLAELGVTLSNA
AYKLNVRPLLRLACSSVFGGASGFTDMLVQHIPSPRDASSRKVDHIYTGPKDSVIYKAMK
ECDPSGPLMVNVTKLYPKSDCSVFDAFGRVYSGKIQTGQTVRVLGEGYSPEDEEDMTVKE
VTKLWLYQARDRVPIAEAPPGSWVLIEGVDASIMKTATLSNVDYDEDVYIFRPLQFNTLP
VVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKDLRE
LYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLERGLAEDIENGVVS
LDWSRKKLGDFFQTKYEWDLLAARSIWAFGPDKQGPNILLDDTLSSEVDKSLLNAVKDSI
VQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSSFLMATPR
LMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVAQPGTPAYIVKAFLPVIESFGFETD
LRYHTQGQAFCLSVFDHWAIVPGDPLDKSIVLRPLEPAPIQHLAREFMVKTRRRKGMSED
VSINKFFDEAMMVELAQQAADLHQQMI
NT seq
2964 nt
NT seq
+upstream
nt +downstream
nt
atggatgacagcttgtatgatgaatttggaaactacatagggccagaaattgattctgat
aaggatagtgacattgaagatgaagatgaagaccttatggagaagcctgatgaagatgaa
ggtgcatcagatggtgaagatgctggtccttcaaatggttggattacaacttccaatgat
gttgatatggacaaccagattgtccttgcagaggacaaaaaatattatccaactgcagaa
gaggtttatggtgatgatgttgagacattggttatggatgaagatgagctaccactagag
caaccaattattaagcctgttagaaatgtaaagtttgaggttggggtaaaagattctagg
acttatgtttcaaatcaatttctggtgggtcttatgtccaatccaactttggtccgcaat
gttgcacttgtaggccacgtgcatcatgggaagacagtcttcatggatatgctggttgag
caaacacatcacatgtcaacatttgatattaaaggagagaaacatatgaggtatacagat
acaaggattgatgagcaggagagaggaatatcaattaaggcagttcccatgtccctagtt
ctcgaggatggcaattcaaaatcatacctttgcaatataatggacacgcctggccatacc
aatttttctgatgaaatgactgctgctcttagacttgctgatggtgcagtgttgattgta
gatgctgctgaaggagttatggtcaatacagagaggggtatacgccatgcaattcaggag
cgattgcccattgttgttgtaattaacaaggttgacaggctgattacagaacttaaattg
cccccaagggatgcatactataaattaaggcatacgttagaaattattaataaccatata
tctgctgcctcatctactgctggaaatgtccaagtcattgacccagctgctggaaatgtg
tgttttgctagtgctactgcaggatggtcatttactttgcaatcgtttgcaaagctatat
gtcaaacttcatggaattccttttgatgctgataagtttgcatctcgtctttggggagat
tattattatcattctgacaccagaacatttaagaaaaaacaacctgcaagtggaggggaa
aggtcatttgttcaatttgtacttgagcctctatacaaaatatacagtcaagtcattggt
gaacataggaaaagtgttgagactactcttgcagagcttggtgttactcttagcaatgca
gcttacaagttgaatgttaggcctttgctaagactggcttgtagctcagtttttggtgga
gcttcaggattcactgacatgcttgttcagcacataccttctcccagggatgcttcttct
cggaaggttgatcatatttatactgggcctaaagactctgtgatttataaagcaatgaaa
gaatgtgatccttctgggcctttaatggttaacgtcaccaaactataccccaagtcagac
tgcagtgtatttgatgcgtttggtagggtttatagtggtaagattcaaacagggcagact
gtacgagtcttgggtgagggctattcaccagaggatgaggaagatatgacagtaaaggaa
gtaacaaaattatggctttatcaagctcgagacagggttcccattgccgaggctcctcct
ggatcttgggttctcattgaaggagtggatgcatctattatgaaaactgcaactctgtct
aatgtagattatgatgaggatgtttacatattccgaccacttcaattcaatacccttcct
gtggtgaaaactgctactgagcctctaaatccaagtgagttgccaaagatggtagagggt
cttcggaagatcagcaaaagttatcctctggcaatcactaaagttgaggaatcaggcgag
cataccattttaggcacgggagagctgtacttggattcaattatgaaggatcttagagag
ctctactcagaagtagaagtcaaggtagccgatcctgtcgtttcattttgtgaaacggtt
gtagagtcttcttcaatgaaatgttttgctgagactcctaacaagaagaataaaataacc
atgattgcagagccattggagagaggacttgctgaagacattgagaatggtgtagtaagc
cttgattggtcaagaaagaaactcggggatttcttccagacaaaatatgagtgggatttg
ctggctgcaaggtccatatgggcatttggcccagataagcagggacctaacattctatta
gatgatacgctctcttctgaagtagacaagagtttgctgaatgccgtcaaggattccatt
gttcaagggtttcaatggggggctagagaaggaccactttgtgatgaacccattagaaat
gtaaagttcaaaattgttgatgcaagaattgcacctgagccattgcatcgtgggtctggt
cagatcattcccacagctcgacgagtggcctattcatcttttcttatggcaaccccacga
cttatggaaccagtatactacgttgagatacaaacaccaattgattgtgtctccgccatc
tatactgtcctatcccgaaggcgtggacatgttacagctgatgttgctcaaccagggact
ccagcttacattgtcaaggcatttttacccgttatagaatcttttggctttgagacggac
ttgcggtatcatacacaaggccaagctttttgtctctctgtgtttgaccattgggccatc
gttcctggtgatccccttgataagagcattgttttacggcctcttgagccagcaccaata
caacaccttgctcgtgaattcatggtgaagacaaggcgtagaaagggaatgagcgaggat
gtgagcataaacaagttctttgacgaggcgatgatggtcgagttggctcagcaagcagct
gatcttcatcaacaaatgatataa
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