Benincasa hispida (wax gourd): 120080566
Help
Entry
120080566 CDS
T07258
Name
(RefSeq) 5'-3' exoribonuclease 4 isoform X1
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
bhj
Benincasa hispida (wax gourd)
Pathway
bhj04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
bhj00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
120080566
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhj03019
]
120080566
Messenger RNA biogenesis [BR:
bhj03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
120080566
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
zf-CCHC_5
Motif
Other DBs
NCBI-GeneID:
120080566
NCBI-ProteinID:
XP_038891195
LinkDB
All DBs
Position
6:49206277..49217435
Genome browser
AA seq
963 aa
AA seq
DB search
MGVPAFYRWLADRYPRSIADVVEEEPVNGPSGVLLPIDVSKPNPNGMEFDNLYLDMNGII
HPCFHPEGKPPPTTYDAVFKSIFDYIDHLFSLVRPRKVLYMAIDGVAPRAKMNQQRSRRF
RAAKDAAEAEAEEERLRKAFEADGQTLLPKEKPETCDSNVITPGTQFMGVLSVALQYYAQ
SRLNHNPGWRFTKVILSDSNVPGEGEHKIMQYIRLQRDLPGFDPNTRHCLYGLDADLIML
SLATHEVHFSILREVIMLPGQQEKCYNCGKVGHLAAECRGKSDGPEDCNAADETPIHKKK
YQFLNIWVLREYLQYELDIPNPPFEINFERIVDDFVFLCFFVGNDFLPHMPTLEIREGAI
NLLMHIYRKEFPAIGGYLTDAGEVLLDKVEHFIQAVAVHEDQIFQKRARIQQAQENNEEM
RGRARRENGPAPPPLTIDKIKLGEPGYKERYYAEKFNASPENIAEIKQDVVLKYVEGLCW
VCRYYYSGVCSWQWYYPYHYSPFASDLKNLADLEITFFIGEPFKPFDQLMGTLPAASSTA
LPEKYRNLMTDPSSPILEFYPSDFEIDMNGKRFQWQGVAKLPFIDERKLLAQTRRLESSL
TDEEKNRNSVMLDLLYTHCAHPLSAQIFSYYQVASQLPPHARTCWVIDTNASGGMNGYLW
LCERNVIRNVVPSPINGLPDIQCNQVLNVTYLNPQKHKHIPEPPKGAIIPKKVLSSLDIK
PFPTLWHEDNNSRRYHGRERPQVPGAIAGPLLGEAAHRLVKNTLNIKPNGSSSGLFEQPY
SRNFPGLPMFSRPRQVGSPGYETGYGEDPNYIYGHYSNYQSASGRPRYSHSSNGMPGDRQ
SSRGNDRVPQQERYNVRTGMSALTIEESVRNRSPDVLTRGPPPVMLPKMLKVGNSANQQN
FSQATDALPSPPHKWINRAPSASLIYTRQQESFLGGVNEKQSKQVYLAKSPASQSGSGSG
SRQ
NT seq
2892 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtcccagccttctaccggtggctcgccgaccggtacccgaggtcgatcgccgat
gtggtcgaggaagagccagtcaatggccctagcggtgtccttctgccgatcgacgtctcc
aagcccaaccctaatggaatggagtttgacaacttgtatttggatatgaatggcataatt
catccgtgctttcatcctgaaggcaagcctccacccactacttatgatgctgtatttaaa
tccatttttgattacattgaccatctcttctcattggttcgcccaagaaaggttctttac
atggcaattgatggtgttgcacctagagctaaaatgaaccagcaacgttctcgacgtttc
agagctgcaaaagatgctgctgaggccgaagctgaagaagaaagattaagaaaagcgttt
gaagccgacgggcaaaccttattgcctaaggagaagcctgaaacatgtgattctaacgtt
atcacccctggaactcaatttatgggagtgctctcagtagcacttcagtattatgcgcaa
tcaagattaaatcacaacccagggtggaggtttacgaaggttattctatctgattcaaat
gttcctggtgagggagaacacaaaattatgcaatacattcgcctacaacgcgatttacct
ggtttcgatcctaacactcgacattgtctgtacggtctggatgcagatctgattatgctt
agtctagcaacacacgaggttcacttttcaatcttaagagaggtaataatgctacctggg
caacaagaaaaatgttacaattgtggcaaagttggtcatttagcagctgagtgtcgtgga
aagtctgatggaccagaagattgtaatgcagccgatgaaactccgattcataagaagaaa
tatcagtttctcaacatttgggttttacgagaatacttgcagtatgaattggacattccc
aatccaccttttgagattaatttcgagcggatagtggatgattttgtgtttttgtgtttc
tttgttggcaatgactttcttccacatatgccgaccttggagataagagagggtgctatt
aatttactgatgcacatatatagaaaggagtttcctgctattggtggttatcttactgat
gcgggtgaggttttgttagataaagtggagcattttatccaagctgtagctgtacatgaa
gaccaaatctttcagaaaagagcccggattcagcaggcacaggagaataatgaagaaatg
agaggtagagctcggagagagaatggacctgcacccccacctctgacaattgacaagatc
aagttaggggagcctggatacaaggagaggtattatgccgagaagttcaatgctagccca
gaaaacattgctgaaataaaacaagatgtggtcctgaagtatgtggagggtttatgttgg
gtctgtcgatattactattcaggggtttgctcttggcaatggtattatccttatcattat
tcaccttttgcctctgaccttaaaaacttggctgatttggagataacctttttcatcgga
gagccatttaagccttttgatcaactgatgggaactctaccagctgcaagttcaactgct
cttcctgagaaatacaggaacttgatgactgatccgtcatcgcctatccttgaattttat
ccttcagactttgagattgacatgaatggaaagcgtttccagtggcagggtgttgccaaa
ttacctttcattgacgagagaaagttgcttgctcaaactaggagacttgaaagctctttg
acggatgaagagaagaatcggaatagtgtgatgcttgatttgctttatacacattgtgcc
catccattatctgcacagattttctcttattaccaagttgctagtcaactacctccacat
gcaagaacttgttgggtgattgatacaaacgccagtggtgggatgaatggatacctgtgg
ttgtgtgaaagaaatgtaatccgtaatgttgttccatcaccgatcaacggtttgccagac
atccaatgtaatcaagtcctaaatgttacatatcttaatccccagaagcataaacatatc
cctgaacctccgaagggagcaatcatcccgaaaaaggttctaagttccttggatatcaaa
ccgttccctacattatggcacgaagacaataattcccggcgctatcatggcagagaacgg
ccccaagtacctggagctattgcaggccctctattgggagaagcagctcatcgtcttgtc
aaaaacacactcaatatcaaacctaatggctcatcatcgggattatttgaacaaccctat
tctcgcaatttcccaggactgcctatgttctctcgtccacgacaagttggatctccaggt
tatgaaacagggtatggtgaagatccaaattatatctacggccactatagtaattaccag
agtgcatcaggtagaccaagatattcccactcttcaaatggtatgccaggtgacaggcaa
agttcccgaggaaatgatagggtaccgcaacaggaacgatacaatgtgaggactggaatg
tctgctttgacgatcgaagagagtgtaaggaatcgatctcctgatgttttaactcgtggc
cctcctcccgtgatgttgccaaagatgctgaaggttggaaactcagcaaatcaacagaat
ttttcccaggctactgacgctcttccttcaccaccacacaaatggattaatagagcgcca
agtgcaagcttaatatatacaagacaacaagaaagttttctgggaggggtcaacgagaaa
caatcgaaacaagtgtatctagcaaagagtccagcatcccagagcgggtcaggttcagga
agcaggcagtaa
DBGET
integrated database retrieval system
