Sutcliffiella horikoshii: B4U37_02380
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Entry
B4U37_02380 CDS
T04904
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bhk
Sutcliffiella horikoshii
Pathway
bhk03030
DNA replication
bhk03410
Base excision repair
bhk03420
Nucleotide excision repair
bhk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bhk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
B4U37_02380 (ligA)
03410 Base excision repair
B4U37_02380 (ligA)
03420 Nucleotide excision repair
B4U37_02380 (ligA)
03430 Mismatch repair
B4U37_02380 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bhk03032
]
B4U37_02380 (ligA)
03400 DNA repair and recombination proteins [BR:
bhk03400
]
B4U37_02380 (ligA)
Enzymes [BR:
bhk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
B4U37_02380 (ligA)
DNA replication proteins [BR:
bhk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
B4U37_02380 (ligA)
DNA repair and recombination proteins [BR:
bhk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
B4U37_02380 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
B4U37_02380 (ligA)
MMR (mismatch excision repair)
DNA ligase
B4U37_02380 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
B4U37_02380 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
RNA_pol_A_CTD
BRCT_2
HHH
5_3_exonuc
HHH_8
Motif
Other DBs
NCBI-ProteinID:
ART74960
LinkDB
All DBs
Position
453887..455893
Genome browser
AA seq
668 aa
AA seq
DB search
MEREQAEKRVLELHDVLNQYNYEYHVLDKPSVSDAEYDSLLQELLTLEKEHPELQAEDSP
TQRVGGNILEMFNKVEHRTPMLSLGNAFNEDDLRDFDRRVKQAVGDDVTYVCELKIDGLA
VSLRYEDGLFVLGATRGDGTEGEDVTMNLKTIKSIPLRLKEPVTMEVRGEAYMPKNSFEK
LNAAKMEREEEPFANPRNAAAGSIRQLNPKIAASRNLSVYVYSLADAGEAGVDSHSEALD
YLDKLGFKTNTERKVCTSIEEVLEYVTAWHTKRPDLSYDIDGIVIKVDNTEHQEQLGFTA
KSPRWAIAYKFPAEEVTTKLLDIELNIGRTGVVTPTAILEPVRVAGTTVQRASLHNEDLI
REKDIKLGDTVIVKKAGDIIPEVVNVLVEQRTGEERDFTMPTHCPECESELVRIEGEVAL
RCINPKCPAQIREGLIHFVSRNAMNIDGLGEKVIAQLFRENLIEDVADLYKLTKEQLLEL
ERMGEKSADNLISAIEKTKENSLERLLFGLGIRLVGAKAAKTLAQEFDHMDKLASLSKEE
LTAIHEIGDKMADSIVTYFEQPEVEELLAELKELGVNMAYKGPKPVSAEDVDSYFAGKTI
VLTGKLEEMSRNDAKAAIEQLGGKVTGSVSKNTHLVIAGEEAGSKLTKAQELGIEVWNEA
QMLKEIQS
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggaaagagaacaagctgaaaaacgggttctcgagctgcatgatgtgctgaaccaatat
aattatgaatatcatgtgctggacaaaccgtctgtttcagatgccgaatacgactctctt
ttacaagagctattaacgctggaaaaggagcatccagaactgcaagcagaagactctcca
actcagcgtgtgggagggaatattcttgagatgttcaacaaggtcgagcaccgtacgccg
atgctcagccttggcaatgccttcaacgaagacgacttgcgtgactttgaccgccgagtg
aaacaggctgtaggcgacgatgtgacatatgtgtgcgagctgaaaattgacggtcttgcc
gtttcattgcgctatgaggatggcctgttcgttcttggtgccactcgtggggatggaaca
gaaggtgaggacgtcaccatgaacctcaaaacaataaaatccattcctttgcgtttaaaa
gaaccggtaacgatggaggttcgcggcgaagcatatatgccgaagaactcctttgaaaag
ctaaacgcggcaaaaatggagcgcgaagaagagccgtttgccaacccgcgtaatgcggcg
gcaggttctattcgtcagcttaatccgaagattgctgcatcccgtaacttgtccgtgtac
gtatatagtcttgcggatgcaggagaagcaggtgtggattcccacagcgaggcgttagat
tacctcgataagctcggctttaaaacaaatacggaaagaaaagtgtgcacatccatcgaa
gaagttttggaatatgtcacagcttggcacacaaaacgcccggatctgtcgtatgatata
gacggtatcgttattaaagtggataacaccgaacaccaagaacagctaggttttacggca
aaaagtccaagatgggccattgcgtacaaatttccggcagaagaagtgaccactaagctt
cttgatattgaattaaatattggccgtacaggtgtggtgacaccaacggctatccttgaa
cctgtgcgtgtagctggcacgacggtccaacgcgcgtccttacataatgaagacctcatc
cgtgaaaaggacatcaagcttggtgataccgttatcgttaaaaaggctggagatatcatt
cctgaagtggtgaatgtacttgtagagcagcgaactggtgaagagcgtgattttacaatg
ccgacacactgcccggaatgtgagagcgaactagtccgtattgaaggggaagtggcgttg
cgctgcatcaacccgaaatgtccggcacaaattcgtgagggattgattcactttgtatct
cgtaacgccatgaatattgatggtcttggtgaaaaggtaattgcccaacttttccgtgag
aatttgatcgaagacgtggcagatctttataaattaacaaaagaacagcttctagaactt
gagcgaatgggtgagaagtctgcggataacttgatttctgctattgaaaaaacgaaggaa
aactcgttggagcgccttctgtttggactaggaatccgactggtcggagcgaaagcagcc
aaaacattggcacaggaatttgatcatatggacaaacttgcaagcttatcgaaagaagag
ctgacggcgattcacgagatcggcgacaagatggcagactccattgtcacttattttgaa
cagccggaagtggaagaactacttgcagagctgaaagaacttggtgttaacatggcctat
aaagggccaaaacctgtaagcgcggaagacgttgattcttattttgcaggaaaaacgatc
gtcctaacagggaaactggaagagatgtcacgaaatgacgcgaaggcggccattgagcag
cttggcggaaaagtgacgggaagcgtcagcaagaacacgcacctagttattgctggagaa
gaggccggctcgaagcttacgaaggcccaggagcttggaatagaagtttggaacgaagca
caaatgcttaaggaaatacaatcataa
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integrated database retrieval system
