Bordetella holmesii ATCC 51541: D560_2252
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Entry
D560_2252 CDS
T03052
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bho
Bordetella holmesii ATCC 51541
Pathway
bho03030
DNA replication
bho03410
Base excision repair
bho03420
Nucleotide excision repair
bho03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bho00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
D560_2252 (ligA)
03410 Base excision repair
D560_2252 (ligA)
03420 Nucleotide excision repair
D560_2252 (ligA)
03430 Mismatch repair
D560_2252 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bho03032
]
D560_2252 (ligA)
03400 DNA repair and recombination proteins [BR:
bho03400
]
D560_2252 (ligA)
Enzymes [BR:
bho01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
D560_2252 (ligA)
DNA replication proteins [BR:
bho03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
D560_2252 (ligA)
DNA repair and recombination proteins [BR:
bho03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
D560_2252 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
D560_2252 (ligA)
MMR (mismatch excision repair)
DNA ligase
D560_2252 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
D560_2252 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
BRCT_2
Zn_ribbon_NUD
Cys_rich_KTR
Motif
Other DBs
NCBI-ProteinID:
AHV92195
LinkDB
All DBs
Position
2106154..2108238
Genome browser
AA seq
694 aa
AA seq
DB search
MVANAAERAARLRAEIAQHNVRYYVYDEPAISDAEYDALMRELTALETAHPELITPDSPT
QRVGAAPLAEFGSVQHAMPMLSLGNGFEDEDVHAFDKRVCDTLRGAGLLGQAEPAGYFCE
LKLDGLAISLRYENGELVQAATRGDGQTGEDVTANIRTINAIPLKLKGQVPAVLEVRGEV
LMNRAEFEKLNQKQAARGEKVFVNPRNAAAGSLRQLDPRVTAQRPLRFFAYSWGEVQGLP
TGVSDAFDETAPGTGVASTLPRDTHGGMLEWLADLGLPVNVRFNHKAQGADGLLAFYRRI
GSERAGLPYDIDGVVYKVDALPAQRVLGFVARAPRWALAHKFPAEEASTDLLGIEVQVGR
TGAITPVARLKPVFVGGVTVTNATLHNEDEIRRKDVRVGDVVVVRRAGDVIPEVVGPVLE
KRSAELPLFVMPTHCPICGSAVERLEDETIARCTGGLFCPAQRKQTLVHAAGRKALDIEG
LGDKLVEQLVDNGRLKTLADVFTLDAFELAALDRMGKKSAENLVAAIDQARRPSLGRLLF
ALGIRHVGETTARDVARHFGNISRIMDADEEALLAVPDVGPVVAGSIHRFFREPHNREVV
HQLEQRGVQPQAEAQAQGGSLTGKTFVLTGTMPTWSRDEAARHILAAGGKVSGSVSKKTA
YVVAGEDAGSKLVKAQELGLTILGEDGLKALLGQ
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atggttgcgaatgccgctgagcgtgccgcccgtttgcgggcggagatcgcgcagcataat
gtccgttattacgtctacgacgaacccgcgatttccgatgccgagtatgacgcgctgatg
cgcgagctgacggcgctggaaaccgcgcatcccgagctgattacgccggactctcccacg
caacgcgtgggggccgcgccgctggccgaattcggcagcgtgcagcacgccatgcccatg
ctgtcgctgggcaatggcttcgaggatgaagacgtacacgccttcgacaagcgggtgtgc
gacaccttgcgcggcgccggcttgctggggcaggccgagccagccgggtatttctgtgag
ctcaagctcgacggcctggccatcagcctgcgctacgagaacggtgagctggttcaggcc
gccacgcgcggcgatggccagaccggcgaggacgtcactgccaatatccgtacgatcaac
gccatcccgctcaagctcaagggtcaggtgcccgccgtgctggaagtgcgcggcgaggtg
ctgatgaatcgggcggaattcgagaaactgaatcagaagcaggctgcgcgcggcgagaag
gtcttcgtcaatccgcgcaacgccgccgctggtagtctgcgccagctcgatccgcgcgtg
accgcgcaacgaccgctgcggttttttgcctatagctggggcgaggtgcagggcttgccc
accggggtgagcgatgctttcgatgaaaccgcgcccgggacgggggtggcgtcgacgttg
ccgcgtgacacccacggcggcatgttggagtggctggccgatcttggcctgccagtcaac
gtgcgtttcaaccataaggcccagggcgccgacggcctgctggcgttttaccgccgcatt
ggttccgagcgggcagggttgccttacgacatcgatggcgtggtctataaagttgatgcg
ctgcccgcgcaacgcgtgctcggattcgtggcccgcgcgccgcgctgggcgctggcgcac
aagtttcccgccgaggaggcgtcgaccgacctgctcggcatcgaagtgcaggtgggccgc
accggcgccatcaccccggtggccaggcttaaaccggtcttcgtgggtggcgtcacggtc
accaacgcgaccctgcacaatgaagacgagatccgccgcaaggatgtgcgcgtgggcgat
gtggtcgtggtgcgccgcgcaggcgatgtgattcccgaggtcgtcgggccggtgctggaa
aagcgcagcgcagagttgccgctgtttgtcatgcccacgcattgcccgatctgcgggtcg
gccgtcgaacgtctcgaagacgagaccatcgcgcgctgcacgggcgggctgttctgcccg
gcgcagcgcaaacagacgctggtgcatgccgcgggccgcaaggcgctggatatcgaaggg
ctgggcgacaagctggtcgagcaactggtggataacggccggctcaagaccctggctgac
gtgttcacgctggatgccttcgaactggcggccttggaccgcatgggcaagaaatccgcc
gagaatctcgtggccgcgatagaccaggcgcggcgtccttcgctaggccggctgctcttt
gcgctgggcatccgccatgtcggtgaaacgacggctcgggatgtggcgcggcactttggc
aacatctcccgcatcatggatgccgacgaggaagccttgctggcagtgccggatgtcggg
cctgtggtcgcgggctccatccatcgtttctttcgcgaacctcacaatcgcgaagtggtg
caccagctggagcaacggggggtgcagcctcaggcggaggcgcaggcgcaaggcggcagc
ctgacgggcaagacctttgtgctgacggggaccatgccgacctggagccgcgacgaggcc
gcgcgccatatcctggccgcaggcggcaaggtcagcggttcggtgtccaagaagaccgct
tatgtcgtggcgggtgaagacgccggcagcaagctcgtcaaggcgcaggaactcggcctg
accattcttggcgaggatggcctgaaggctctgctcgggcaatag
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