Brachybacterium huguangmaarense: BRM3_10230
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Entry
BRM3_10230 CDS
T08617
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bhq
Brachybacterium huguangmaarense
Pathway
bhq03030
DNA replication
bhq03410
Base excision repair
bhq03420
Nucleotide excision repair
bhq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bhq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BRM3_10230 (ligA)
03410 Base excision repair
BRM3_10230 (ligA)
03420 Nucleotide excision repair
BRM3_10230 (ligA)
03430 Mismatch repair
BRM3_10230 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bhq03032
]
BRM3_10230 (ligA)
03400 DNA repair and recombination proteins [BR:
bhq03400
]
BRM3_10230 (ligA)
Enzymes [BR:
bhq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BRM3_10230 (ligA)
DNA replication proteins [BR:
bhq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BRM3_10230 (ligA)
DNA repair and recombination proteins [BR:
bhq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BRM3_10230 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BRM3_10230 (ligA)
MMR (mismatch excision repair)
DNA ligase
BRM3_10230 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BRM3_10230 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
UYG18250
LinkDB
All DBs
Position
2242517..2244874
Genome browser
AA seq
785 aa
AA seq
DB search
MAELTAQIEQARVEYYEKDAPTLTDADYDQLERELRELEARNPQLARADSPTQTVGGGVA
AGFAPVEHLERMLSLDNAFSLEDVDEWAHRVEEGLGGAAEVEYLTELKIDGLAIDLVYED
GRLVRGVTRGDGRVGEDVTPNVRTIANVPERLDTDEPPAVLEVRGEVFFPSAAFEELNEQ
RREAGLAEFANPRNTAAGSLRQKDPAVTASRALRVYVHGIGVHEGVTLGSQSEVYDQLAA
WGLPTSPHTRVLGSLADVHAFIEHHGEHRHDVEHEIDGIVVKVDAFSQQRRLGSTSRAPR
WAIAFKYPPEEVTTTLLDIQTHVGRTGRVTPFGVLEPVKVAGSTVEFATLHNQFDVERKG
VLIGDTIVLRKAGDVIPEIVGPVEALRDGSETAFEMPRRCPSCGTEIRPEREGDKDWRCP
NAKDCPAQVTGRIAHAAGRGAFDIESLGEESAVALTDPDLRRPEALAALRAGHSVYLPIR
DLEDTRLPGFVVLKNGQESEGTDGVPLLRVTDPDDPLLPPLQEPCVTTGANLFDLTAEQL
RDVFVWQPERRDGEATGDWRVQPAFWSRPTFRHYKRDGAWKQVKEPAPLKNTGVLVDELA
KARSQPLWRVLVALSIRHVGPTAARSLATAYGSMDAIREADVDRLADTDGVGGIIAEAVR
EWFSVPWHEELVRGWEASGVRMADDVEEGFTKTLEGLTVVVTGGLEGFTRDGAKEAIIAR
GGKAAGSVSKKTDYVVVGENAGSKADKARDLGLTILDEAGFVELLAHGPAETDTEEPDDE
ADSED
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atcgccgagctgaccgcgcagatcgagcaggcccgcgtcgagtactacgagaaggacgcg
ccgaccctcaccgacgcggactacgaccagctcgagcgcgagctgcgcgagctcgaggcg
cgcaacccgcagctcgcccgcgccgactcgccgacccagaccgtcggcgggggggtggcc
gcgggcttcgcgcccgtcgagcacctcgagcgcatgctctcgctcgacaacgccttcagc
ctcgaggacgtcgacgagtgggcccaccgggtcgaggagggcctcggcggggccgccgag
gtcgagtacctgaccgagctcaagatcgacggcctcgcgatcgacctggtctacgaggac
ggccgtctggtgcgcggcgtgacccgcggcgacggacgcgtgggcgaggacgtcaccccc
aacgtgcggaccatcgccaacgtgcccgagcgtctcgacaccgacgagccgcccgccgtg
ctcgaggtgcgcggcgaggtgttcttcccctcggccgcgttcgaggagctcaacgagcag
cgcagggaggccgggctcgccgagttcgccaacccgcgcaacaccgcggccggctcgctg
cgccagaaggaccccgccgtgacggcgtcccgcgcgctgcgggtgtacgtgcacggcatc
ggggtccacgagggcgtgacgctcggctcccagtccgaggtgtacgaccagctcgcggcg
tggggcctgcccacctcgccgcacacccgcgtgctcggcagcctcgccgacgtgcacgcg
ttcatcgagcaccacggcgagcaccgccacgacgtcgagcacgagatcgacggcatcgtc
gtcaaggtcgacgccttctcccagcagcgacgcctcggctcgacctcgcgcgcgccgcgc
tgggcgatcgccttcaagtacccgcccgaggaggtgaccacgaccctcctggacatccag
acccacgtgggccgcacgggacgggtgacccccttcggcgtgctcgagcccgtcaaggtc
gcgggctcgaccgtcgagttcgcgacgctgcacaaccagttcgacgtcgagcgcaagggc
gtgctcatcggcgacacgatcgtgctgcgcaaggcgggcgacgtgatccccgagatcgtg
ggccccgtcgaggcgctgcgcgacggctccgagacggcgttcgagatgccccggcgctgc
ccgtcgtgcgggaccgagatccggcccgagcgcgagggcgacaaggactggcgctgcccc
aacgccaaggactgccccgcgcaggtaacgggacgcatcgcccatgcggcgggccgcggc
gccttcgacatcgagtcgctcggcgaggagagcgccgtcgcgctcaccgaccccgatctc
cgacgccccgaggcgctcgccgcgctccgcgccggccatagcgtctacctgccgatccgc
gatctggaggacacccgcctgcccggcttcgtggtgctcaagaacggtcaggagagcgag
ggcaccgacggcgtgccgctcctgcgtgtcaccgatccggacgatccgctgctgccgccc
ctccaggagccgtgcgtcacgaccggggcgaacctcttcgacctcaccgccgagcagctg
cgcgacgtgttcgtgtggcagccggagcggcgcgacggcgaggccacgggcgactggcgg
gtccagccggcgttctggtcgcgccccaccttccgccactacaagcgcgacggcgcctgg
aagcaggtcaaggagcccgcgccgctcaagaacaccggcgtgctcgtcgacgagctcgcc
aaggcgcgctcccagccgctgtggcgcgtgctcgtcgccctgtcgatccgccatgtcggg
cccaccgcggcccggtcgctcgcgacggcgtacggctccatggacgcgatccgcgaggcg
gacgtcgaccggctcgccgacaccgacggcgtgggcggcatcatcgccgaggccgtgcgc
gagtggttctcggtgccgtggcacgaggagctcgtgcgcggctgggaggcctccggcgtg
cgcatggctgacgacgtcgaggagggcttcacgaagaccctcgaggggctgacggtcgtg
gtcacgggcggcctcgagggcttcacgcgcgacggcgccaaggaggcgatcatcgcccgc
gggggcaaggccgccggctccgtctcgaagaagaccgactacgtcgtggtgggggagaac
gccggctccaaggccgacaaggcgcgcgacctcgggctcacgatcctcgacgaggccggc
ttcgtggagctgctcgcccacggcccggccgagacggacacggaggaacccgacgacgag
gccgactcggaggactga
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integrated database retrieval system
