Borrelia hermsii DAH: BH0552
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Entry
BH0552 CDS
T00764
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bhr
Borrelia hermsii DAH
Pathway
bhr03030
DNA replication
bhr03410
Base excision repair
bhr03420
Nucleotide excision repair
bhr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bhr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BH0552
03410 Base excision repair
BH0552
03420 Nucleotide excision repair
BH0552
03430 Mismatch repair
BH0552
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bhr03032
]
BH0552
03400 DNA repair and recombination proteins [BR:
bhr03400
]
BH0552
Enzymes [BR:
bhr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BH0552
DNA replication proteins [BR:
bhr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BH0552
DNA repair and recombination proteins [BR:
bhr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BH0552
NER (nucleotide excision repair)
GGR (global genome repair) factors
BH0552
MMR (mismatch excision repair)
DNA ligase
BH0552
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BH0552
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_5
HHH_2
DNA_ligase_A_M
PTCB-BRCT
DNA_ligase_ZBD
Motif
Other DBs
NCBI-ProteinID:
AAX17058
UniProt:
B2S0Q2
LinkDB
All DBs
Position
570356..572365
Genome browser
AA seq
669 aa
AA seq
DB search
MIEDVEDEILRLKNIIKRWNREYYVDSSPSVGDLTYDKALLRLQDLESKYPEYKTLDSPT
FRFGSDLLNDFEEVKHSFPILSLDKTYDIKGLSLWIEKMVLESAISGLHTGISVEPKIDG
CSIVLHYKDGILEKALTRGDGRVGNDVTENVKTIRNVPLRIDEKIELVLRGEIYITKENF
LKINRTLKNPYVNARNLASGILRRISSKEVANFPLDIFVYDILYSSLKLNTSHDAFDKLK
QFGFKVNPFCEFFGGKNLEAGIIAHVKKIEALRDSFEYEIDGVVLKIDSFILRKILGSTS
HHPKWSIAYKFESCTGMSKVVDIVVQVGRSGKITPVAHVEKVLVAGASITNASLHNQDYI
DFVGLNVGDIVVISRRGDVIPAVDLVIEKLAVGSFKIPSNCPSCKMTLIKEGAHLFCVNR
HCSCRIIEQVKYFCSKKCMNIVGLSEKTIEFLFEKKFISSEVELYTFNCDRLINLKGFNL
KRINNLKRSIEDSKSRPFRKLLLGMGIKDLGENTILVLINNNLNSFDTISTLCKNKEAAL
AKLLKIKGIGERIALNIIEAFNDKTILDKFNFFKELGLKMEEDNTNDAVYDSFLFGKKFC
ITGSFKGYSRDVLIEKLTKKGAVFSRSVTKCLDFLLVGEKFGLKVQKANNLGIKTFSLFD
IKDFVDLDD
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgatcgaagatgtagaagatgaaattttacgtttgaaaaatatcattaaaagatggaac
agagagtattatgtcgattcttcacccagtgtgggtgatttgacttatgacaaagctctt
ttgcgacttcaggatttggaaagtaaatatcctgaatataaaaccttggattcccccact
tttaggtttggtagcgatcttttaaatgattttgaagaagttaaacattctttccctata
ttaagtttggataaaacttatgatattaagggattatcattgtggattgagaagatggtg
ctagagagtgctatctcaggattgcatactggtatttcagttgaacctaaaattgatggg
tgttcaattgttctccattataaagatgggatacttgagaaagctttgactaggggagat
ggaagggttggtaatgatgttactgaaaatgttaaaacaattagaaatgttcctttgcgt
attgatgaaaagattgaattagtgttgcggggtgagatttatattactaaggaaaatttt
ttgaaaataaatcgcacattaaaaaatccttatgttaatgctagaaatttagcctcaggt
atattgagaagaataagtagtaaagaagttgctaattttcctttagatatttttgtttat
gatattttatattctagtttgaaactgaatactagtcatgatgcttttgacaaacttaag
caatttggatttaaagttaatcctttttgtgaattttttggtggcaaaaacttagaagca
ggtattattgctcatgttaaaaagatagaggccttaagagattcttttgaatatgaaatt
gatggtgttgtgctgaagattgacagctttattttaaggaaaattttgggatctacttct
catcatccaaagtggtcaatagcttataagtttgaatcttgcacaggtatgagcaaagtg
gtagacatagttgttcaggttggccgcagcgggaagattacccctgttgcacatgtagaa
aaagtgcttgttgctggggcttctattactaatgcaagtctgcataatcaagattatata
gattttgttggtttaaatgttggagatattgttgtgatttcaagacgtggggatgtgatt
cctgctgttgacttggtgatagaaaagcttgcggttggtagttttaaaattcctagtaat
tgtccttcgtgtaaaatgactttaataaaagagggtgcacatcttttttgtgtaaataga
cattgttcttgtcgaataattgaacaggtaaaatatttttgtagtaagaaatgcatgaat
attgtaggactttcggagaaaacaatagagttcctttttgaaaagaagtttatatcttca
gaagtcgagctttatacttttaattgtgataggcttattaatctaaagggttttaatctt
aagagaataaataacttaaagcgttcaattgaagacagtaaaagtaggccgtttagaaag
ttgcttcttggtatgggaattaaagaccttggagagaatacaatattagtgctaattaat
aacaatttaaactcgtttgatacaattagtactctttgcaaaaataaagaggctgctctt
gccaaacttttaaagattaagggaataggggagaggatagctttaaatattattgaagca
tttaatgataagactattcttgataagtttaatttttttaaagaattagggttgaaaatg
gaggaagataatactaatgatgctgtgtatgattcctttttatttggtaaaaaattttgc
attacaggttcttttaaagggtattctagggatgtacttattgaaaagcttactaagaaa
ggtgctgttttcagccgttcagttactaagtgtttagattttttacttgttggagaaaag
tttggattaaaagtgcaaaaagccaataatttgggtattaagaccttcagtctttttgat
attaaggattttgtggatttagatgattaa
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