Butyrivibrio hungatei: bhn_I1388
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Entry
bhn_I1388 CDS
T04542
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bhu
Butyrivibrio hungatei
Pathway
bhu03030
DNA replication
bhu03410
Base excision repair
bhu03420
Nucleotide excision repair
bhu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bhu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
bhn_I1388
03410 Base excision repair
bhn_I1388
03420 Nucleotide excision repair
bhn_I1388
03430 Mismatch repair
bhn_I1388
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bhu03032
]
bhn_I1388
03400 DNA repair and recombination proteins [BR:
bhu03400
]
bhn_I1388
Enzymes [BR:
bhu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
bhn_I1388
DNA replication proteins [BR:
bhu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
bhn_I1388
DNA repair and recombination proteins [BR:
bhu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
bhn_I1388
NER (nucleotide excision repair)
GGR (global genome repair) factors
bhn_I1388
MMR (mismatch excision repair)
DNA ligase
bhn_I1388
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
bhn_I1388
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
HHH_2
BRCT
DNA_ligase_OB
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH_5
BRCT_2
HHH
Zn_Ribbon_TF
RUBY_RBDX
HMBD
Motif
Other DBs
NCBI-ProteinID:
AOZ96421
UniProt:
A0A1D9P1P9
LinkDB
All DBs
Position
I:complement(1597715..1599733)
Genome browser
AA seq
672 aa
AA seq
DB search
MPLDIKMEYDELVKTIKHHMDLYYNQDEPEISDYEYDQLMLRLKAMEKEHPELVISDSPT
RIIGGTAKREAGVKITHNVPMLSIEDVFNKEDVKSWVEKVHQMHPDALFSAEQKIDGLSL
SLRYSKDPKDNKLHLTMAETRGDGLIGEDVTANAMVISDIRKIIDLPYDYLELRGEVYMS
HEDFEKFNDEQEKLGKKIAANPRNLAAGTLRQLDPEVTRARGLKMFVFNVQDGPEELKNS
HVNSLDILEKAGVKTVYHRACKSFDEVSEAIDIIGNMREDLDFDLDGAVIKVDNLKWRSD
FPAGSKYSSGHIAYKYPPEEKIIVMDEILVDVGRTGKLTFTGSFHDRETGKPARLCGTSV
SRATLHNQDYINEMQIGIGGEYKLFKSGEIIPKLNGCVKAPDVIYKAPDVCPICGGHLVR
EEDTADIRCINPTCPAQVTRTIAYFTSRDAMNIMGLGDTLVDALVSDGYLKNYADIYHLK
EHRDELIEKGIIGKEKNTDKLLGEIEKSKANDPVRLLTGLAIRNVGKSTAREIMKHFDNL
MDLTKVTVDGFLQIPDIGETTAGDLYDFFHNEENIAIINEMNKLGLNMVVTKDEEASDKL
SGLTIVVTGTLPTLGRKEAEELITKNGGKASGSVSKKTSYVLAGEAAGSKLTKAQELGIE
IIDEAKFLDMIK
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgccattagatattaaaatggaatacgatgagcttgttaagactatcaagcatcatatg
gatctttattataatcaggatgagcccgaaatttcagattatgagtacgatcagctcatg
ctcagattaaaggcaatggaaaaagaacatcctgaactagttatcagtgattctccaaca
aggataattggcggaacggccaaaagagaggctggagttaagatcacacacaatgttcca
atgctttcgattgaggatgttttcaataaggaagatgtaaaaagctgggtagaaaaggtt
catcagatgcatcctgatgctttgttttctgctgagcaaaagatcgatggacttagcttg
tctcttagatatagtaaggatcctaaagataataagcttcacctgactatggcagaaaca
agaggtgatggccttatcggtgaggatgtcacagctaatgccatggtaatttcagatatc
aggaagatcattgatctgccatatgattaccttgagctacgcggtgaagtctacatgtct
catgaagactttgaaaaatttaatgatgaacaggaaaagcttggaaagaaaatagctgcg
aaccccagaaaccttgctgcaggcacattaagacagcttgatcctgaggttacaagggct
cgtggacttaagatgttcgtctttaatgttcaggacggaccagaagagcttaaaaattcc
catgttaattccttagatattttagaaaaagccggtgttaaaacagtttatcatagagcc
tgcaagtcctttgatgaagtatctgaagcgatagatattattggaaatatgagagaagac
cttgattttgaccttgatggtgcagttatcaaagtcgataatttaaaatggagatcagat
ttccctgctggttccaagtattcaagcggtcatatcgcttataagtatcctcctgaagaa
aagataatcgtgatggatgagatacttgttgatgtaggtagaactggtaagcttaccttt
accggaagctttcatgatagagaaacaggtaaacctgcaagattatgcggtacaagtgtt
tctagagcaacgcttcacaatcaggactatatcaatgagatgcaaattggaattggtggt
gaatataagctctttaagagcggcgagatcattcctaagctcaacggttgcgttaaggct
cctgatgtcatatataaagctcctgatgtatgcccaatctgtggtggacatcttgtcaga
gaggaagatacagctgatataagatgtataaatcctacttgtccggcacaagttacaaga
acaattgcatactttacttcaagagatgccatgaatatcatgggacttggtgatacacta
gtagatgcattggtatctgatgggtatctaaaaaattatgcggatatatatcatcttaag
gaacatagagatgagcttattgaaaaaggtatcataggaaaagagaaaaatactgataag
ctccttggtgaaatagaaaagtcaaaggctaatgatccggtaagacttcttacaggtctt
gccattagaaacgtaggtaaatcaacagctagagagatcatgaagcattttgataatctt
atggatcttactaaggttactgtagatggattcttgcagatccctgatattggcgagact
acagctggtgacctttatgatttcttccataatgaagaaaatatagccatcatcaatgag
atgaacaaacttggacttaacatggtggtcaccaaggatgaagaagcatctgataagctt
tcaggtcttacaatcgttgtaactggaacacttccaactcttggacgcaaagaggcagaa
gagctcattactaaaaatggtggtaaagcctcaggtagcgtatcaaagaaaacaagctat
gttcttgcaggtgaagccgctggaagtaagcttacaaaggctcaggaacttggaattgaa
atcattgacgaagctaagtttttagatatgatcaaataa
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