Bisgaardia hudsonensis: A6A11_09225
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Entry
A6A11_09225 CDS
T06663
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bhud
Bisgaardia hudsonensis
Pathway
bhud03030
DNA replication
bhud03410
Base excision repair
bhud03420
Nucleotide excision repair
bhud03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bhud00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
A6A11_09225 (ligA)
03410 Base excision repair
A6A11_09225 (ligA)
03420 Nucleotide excision repair
A6A11_09225 (ligA)
03430 Mismatch repair
A6A11_09225 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bhud03032
]
A6A11_09225 (ligA)
03400 DNA repair and recombination proteins [BR:
bhud03400
]
A6A11_09225 (ligA)
Enzymes [BR:
bhud01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
A6A11_09225 (ligA)
DNA replication proteins [BR:
bhud03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
A6A11_09225 (ligA)
DNA repair and recombination proteins [BR:
bhud03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
A6A11_09225 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
A6A11_09225 (ligA)
MMR (mismatch excision repair)
DNA ligase
A6A11_09225 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
A6A11_09225 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
DZR_2
Motif
Other DBs
NCBI-ProteinID:
QLB13773
LinkDB
All DBs
Position
2018037..2020058
Genome browser
AA seq
673 aa
AA seq
DB search
MQTEIEKQINELRKTLRYHEYQYHILDNPVIPDSEYDRLFHQLKTLEQTYPELVTEDSPT
QRVGAKPLDGFEQVKHEIPMLSLDNAFSDEEFTAFVKRIQDRLIILPNPLTFCCEPKLDG
LAVSILYVNGRLSQAATRGDGSIGEDITSNIRTIRNIPLQLLMENPPARLEVRGEVFMPQ
AGFEKLNEIALAKGEKTFANPRNAAAGSLRQLDPKITSQRPLMLNAYSIGIAEGVQLPNT
HFERLQWLKSIGIPINKEIQVCEGIENVLNFYRTIGEKRNTLGYDIDGTVLKINDITLQE
ELGFISKAPRWAIAYKFPAQEELTILNDVEFQVGRTGAITPVAKLQPVFIAGVTVSNATL
HNGDEIARLDIAIGDTVIIRRAGDVIPQIIGVLHDRRPVNAKPIIFPSRCPVCDSVITRI
EGEAVARCTGGLICAAQRKEALKHFVSRKAMDIDGIGAKLIEQLVDREKIHTPADLFKLD
METLVRLERMGPKSAENALNSLEKAKNTTLARFIFALGIREVGEATALNLANYFKNLDAL
KTATIEQLQEVQDVGEVVANRIYIFWREPHNVAVVEDLISQGIRWQDVEVKEISENPLKN
KTVVLTGTLNQMTRTEAKEILLQLGCKVSGSVSSKTDYVIVGESAGSKLTKATDLGIKIL
TEEEFIALIRQYS
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atgcaaactgaaatcgaaaaacaaattaacgaattaagaaaaacattacgttaccacgaa
tatcaatatcatatcttagataaccccgttatcccagatagtgaatatgatcgtttattt
catcaactaaaaacattagaacaaacatatccagaactggttacagaagactcccccaca
caacgtgtaggcgctaaaccacttgatggatttgagcaagtaaaacacgaaatcccaatg
ctttccttggataatgctttttcagatgaagaatttactgcttttgtaaaacgtattcag
gatcgcttaattatcttacctaatccattaaccttttgctgtgagcctaagttagatggc
ttagcggtgagtattttgtatgtaaatggacgtttaagccaagcggctacaagaggtgat
ggatctattggtgaagatattactagtaatattcgaacaattagaaatattcctttgcaa
ttattaatggaaaacccgccagctcgtttagaagtgcgtggtgaagtttttatgccacaa
gctggctttgaaaaattaaatgaaatagcgttagcaaaaggcgaaaaaacatttgcaaac
ccaagaaatgcggcggctggttcattgcgtcaacttgaccctaaaattaccagtcaacga
cctttaatgttaaatgcttacagtatcggtattgctgaaggtgttcaattacctaacact
cactttgaacgattacagtggttaaaatctattggtattccgatcaataaagaaattcaa
gtttgtgaaggaattgaaaatgttctaaatttctaccgcactattggcgaaaaacgcaat
actcttggttatgatattgatggtactgtattaaaaattaatgatattaccttacaagaa
gagctcggttttatctcaaaagcaccacgttgggcaatagcgtataaattcccagcacaa
gaagaattgacaattcttaatgatgttgaatttcaagtgggcagaacaggagcgattact
cctgtagccaaattacaacccgtttttatagctggtgtaacagtaagtaatgcaacattg
cataatggcgatgaaatcgcacgtttagatattgctattggcgataccgttattattcgc
cgagctggcgatgttattcctcaaattattggcgtgctacacgaccgtcgccctgttaat
gctaaaccgattattttcccaagtcgttgccctgtctgtgattcagtcattacaagaatt
gaaggggaagcggttgctcgctgtacaggaggactaatttgtgcagcacaacgaaaagaa
gcactgaaacactttgtttctcgtaaggcaatggatattgatggcattggtgcaaaatta
attgaacagctggttgatcgtgaaaaaattcatactcctgccgatttattcaaactcgat
atggaaaccttagttcgtttagagcgaatgggtcctaaatccgctgaaaatgcactgaat
agcttagaaaaagcaaaaaacaccactttagctcgttttatttttgcccttggtatcaga
gaagtcggcgaagcaacagcattaaatttagcaaactattttaaaaatttagatgcatta
aaaacagcaaccattgaacaactacaagaagtgcaagatgtcggtgaagtggttgccaat
cgtatttatattttctggagagagccccataatgtagctgtagtagaagatcttatttct
cagggaatacgttggcaagatgttgaagtaaaagaaatcagcgaaaatccactaaaaaat
aaaaccgtagttctaactggtactctcaatcaaatgacaagaactgaagccaaagaaatc
ttattgcagcttggttgtaaagtcagtggtagcgtttccagtaaaacagattatgttatc
gttggcgaaagtgcgggctctaagctaacaaaagcaactgatcttggtataaaaatctta
acagaagaagaatttattgcattaattcgacaatatagttaa
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