Brevibacillus humidisoli: LOK74_00245
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Entry
LOK74_00245 CDS
T08900
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bhui
Brevibacillus humidisoli
Pathway
bhui03030
DNA replication
bhui03410
Base excision repair
bhui03420
Nucleotide excision repair
bhui03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bhui00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LOK74_00245 (ligA)
03410 Base excision repair
LOK74_00245 (ligA)
03420 Nucleotide excision repair
LOK74_00245 (ligA)
03430 Mismatch repair
LOK74_00245 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bhui03032
]
LOK74_00245 (ligA)
03400 DNA repair and recombination proteins [BR:
bhui03400
]
LOK74_00245 (ligA)
Enzymes [BR:
bhui01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LOK74_00245 (ligA)
DNA replication proteins [BR:
bhui03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LOK74_00245 (ligA)
DNA repair and recombination proteins [BR:
bhui03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LOK74_00245 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LOK74_00245 (ligA)
MMR (mismatch excision repair)
DNA ligase
LOK74_00245 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LOK74_00245 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
HHH
Motif
Other DBs
NCBI-ProteinID:
UFJ41032
LinkDB
All DBs
Position
50780..52789
Genome browser
AA seq
669 aa
AA seq
DB search
MDRLTAERKIEELRQQIERHNRLYHVEDRPEITDQEYDQLMRELRDLEDLYPDLVTSDSP
TQRVGGEPLPHFEKVEHKVPMLSLGNAFDEADLRDFDRRVRQGVGEQPVRYVCELKIDGL
AVSLRYENGLFVQGATRGDGQTGEDITQNLKTIRSIPLRLSKPVTIEVRGEAFMPKPAFE
KLNQEREAKGEPLFANPRNSAAGSLRQLDPKIAASRSLDTFIYGIGELQGESVDFHSEGL
ELLQSLGFKVNPEWRVFDAIDELIAFIQSWAEKRPALPYEIDGMVIKVDSFAQRQELGFT
AKSPRWAVAYKFPAEEAVTVLEGIEVSVGRTGAVTPTALLKPVSLAGTTVKRASLHNEEI
IREKGLLLGDHVVVKKAGDIIPEIVAVLPERRTGEERPFQMPTHCPECGSDLVRFEDEVA
LRCINPDCPALIREGMIHFVSRLAMNIEGLGEKVVAQLYEQGLITSVADLYYLHERRDEL
LNMERMGEKSVDNLLEAIEASKQNSVERLIFGLGIRLVGAKAAKVLAEQFGHLDVLRQAT
REQLLEINEIGPKMADSILTYFSMPQVQELLDRLRAAGVNFSYKGVRVEAGNDTPLAGKT
VVLTGTLNTLTRQEAEEKIALLGGKVTGSVSKKTDLVIAGDKAGSKLEKAEKLGIEVIDE
AAFLKLLDQ
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atggatcggctgacggctgaacggaaaatagaggaattgcggcaacaaatcgagcgtcac
aaccgtctgtatcatgtagaagatcgaccggagatcactgaccaagaatacgaccaattg
atgcgtgaactaagagacctggaggacctgtaccctgatctggtgacgagtgattcgccg
acgcagcgggtaggtggcgaaccgcttcctcactttgagaaagtggaacacaaagttccc
atgctcagtctgggcaacgcctttgacgaggctgacttgcgcgactttgaccgccgtgtt
cggcagggagtaggtgaacagccagttcgctatgtgtgcgagttgaagattgacgggctg
gcagtctcccttcgctacgagaacggcttgttcgtacaaggggcgacccgtggggacggg
cagacgggcgaggatattacgcagaatctaaagacgatccgttccatcccgcttcggttg
agcaagccggtgacgatcgaagtgagaggcgaagcgtttatgcccaagccggctttcgaa
aagctgaatcaggagcgggaagcaaagggtgaacccctgtttgccaatccgcgcaattcc
gctgctggttctctgcgccagctagacccgaagatcgccgcctcccgctcgttggacacg
tttatctacgggattggcgaactgcaaggcgaatcggtggactttcacagtgaagggctt
gaactgctgcagtcgctcggcttcaaggtgaatccggagtggcgcgtttttgatgctatc
gatgagttgattgccttcattcaatcgtgggcggaaaagcggcccgctctaccgtacgag
atcgacggcatggtgatcaaggtagacagctttgcccagcggcaggaactagggttcacc
gcaaaaagtccgcgatgggcggttgcctacaagtttccggcagaagaagctgtgacggtg
ctggaaggcatcgaggtgagcgtcggacggaccggcgcggttacgccgacggcgctgttg
aaaccggtcagcctggcggggaccactgtgaagcgagcctctctgcacaatgaagagatt
atccgggaaaaaggacttttgcttggcgatcacgtcgtggtgaaaaaagcgggcgacatc
attccagagattgtcgctgtcctgccagagcggagaaccggtgaggaacggccgttccag
atgccgacacactgtccggaatgcggcagtgacctggttcgctttgaggatgaagtagcg
ctgcgctgcatcaatcctgactgcccggcgctgatacgggagggtatgattcactttgtc
tcacggctcgcgatgaacatcgaagggcttggtgaaaaggtagttgcccagttgtatgag
caagggctgattaccagtgttgccgatctctattacctgcacgagcggcgcgatgaactg
ctcaacatggagcggatgggggaaaaatcggtcgacaacctgctggaagcaatcgaagcg
agcaaacagaattctgtggagcggctcatcttcggtctcggcatccggttggtcggagcc
aaagcagccaaagtgctggccgagcagtttggtcacctcgatgtgcttcggcaggctacg
cgggagcaactgctggagattaacgagatcggaccgaagatggctgacagcatcctcact
tacttttcaatgccgcaggtacaggagttattggaccggctgcgtgctgccggcgtcaac
ttcagctacaaaggggtccgcgtcgaagcggggaacgacacgccgttggctggcaaaaca
gtagtgttgactggtacgttgaacacactgacccgtcaggaggcagaggagaaaattgct
ctgttgggcggaaaggtgacaggcagtgtcagcaaaaaaacagacctggtgatcgccggt
gacaaagcaggttccaagctggaaaaggcggagaagttgggcatagaggtgatcgacgaa
gcggcctttctgaagctgcttgatcagtag
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integrated database retrieval system
