Bacteroides humanifaecis: JXR92_013380
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Entry
JXR92_013380 CDS
T08258
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bhum
Bacteroides humanifaecis
Pathway
bhum03030
DNA replication
bhum03410
Base excision repair
bhum03420
Nucleotide excision repair
bhum03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bhum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JXR92_013380 (ligA)
03410 Base excision repair
JXR92_013380 (ligA)
03420 Nucleotide excision repair
JXR92_013380 (ligA)
03430 Mismatch repair
JXR92_013380 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bhum03032
]
JXR92_013380 (ligA)
03400 DNA repair and recombination proteins [BR:
bhum03400
]
JXR92_013380 (ligA)
Enzymes [BR:
bhum01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
JXR92_013380 (ligA)
DNA replication proteins [BR:
bhum03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
JXR92_013380 (ligA)
DNA repair and recombination proteins [BR:
bhum03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
JXR92_013380 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JXR92_013380 (ligA)
MMR (mismatch excision repair)
DNA ligase
JXR92_013380 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JXR92_013380 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
RNA_pol_A_CTD
rve_2
EAD10
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
UDB43350
LinkDB
All DBs
Position
3277026..3279023
Genome browser
AA seq
665 aa
AA seq
DB search
MTVKEKIDQLRAELHQHNYNYYVLNAPEISDKEFDDLMRELQDLEKEHPEYQDDNSPTMR
VGSDLNKNFTQVAHKYPMLSLGNTYSENEVTDFYERVKKALNEEFEICCELKYDGTSISL
TYEDGKLVRAVTRGDGEKGDDVTDNVKTIRTIPLVLHGNYPKSFEIRGEILMPWVVFEEL
NREKEAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYLLGEELPCDGHYENLQAA
ASWGFKTSEHARKAHSLEEVFEYINYWNTERKNLPVATDGIVLKVNSLRQQKNLGFTAKS
PRWAIAYKFQAERALTRLNKVTYQVGRTGAVTPVANLDPVQLSGTIVKRASLHNADIIEG
LDLHIGDMVYVEKGGEIIPKITGVDKDARSMLIGEKVKFITHCPECGSKLIRFEGEAAHY
CPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDMFYRLGLIKDTADLYRLKTDDIKNL
ERMGEKSAENIVNGIAASKEVPFERVLFALGIRFVGETVAKKIAKSFMDIEELENADLEK
LKNIDEIGEKIAQSIITYFSNPTNRELVERLKSNGLQLHRTEEDLSGYTDKLAGQSIVIS
GVFTHHSRDEYKEMIEKNGGKNVGSISSKTSFILAGENMGPAKLEKAQKLGVKIMSEDEF
LALLS
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgactgtaaaagaaaaaatagaccagctccgtgcggaattacaccagcacaactacaat
tattatgtgctgaatgctcctgaaatatccgacaaggagtttgacgacctgatgcgcgag
ctacaagatttagagaaagaacatcctgaataccaagatgataattcgcccacgatgcgt
gtaggaagtgatttaaataagaacttcacacaagtggcacacaaatatcccatgctttca
ttgggaaacacctattccgaaaacgaagtgaccgacttttacgaacgggtaaaaaaagcg
ttgaacgaggagtttgaaatctgctgcgagctgaagtatgacggtacttccatctcgctg
acttacgaggatggcaaactggtgcgtgccgtcacccgtggcgacggcgaaaagggcgat
gatgtgacggacaatgtaaagacaatccggacgattccgctggtcctccacgggaattat
cctaagtcattcgaaatcagaggggaaatcctgatgccctgggtggttttcgaagaactg
aaccgggaaaaggaagcacgtgaggaaccgcttttcgccaatccgcgcaacgctgcttcc
ggtaccttgaagttgcagaattccgccatcgtagcatccagaaagctggatgcttatctc
tactatctattgggagaagaattgccctgcgacggccattacgaaaacctgcaagctgcc
gccagctggggatttaaaacatcagagcacgccagaaaagcccacagcctggaggaagtc
ttcgagtacatcaattattggaacacggagcgtaagaaccttccggtggctactgatggt
attgtactaaaagtcaacagcttgaggcagcagaagaatttaggattcacagccaagtct
ccccgatgggccatcgcatataaattccaggcagaacgggcactaacacgattgaacaag
gttacctaccaggtaggacgcaccggtgcagtgactccggtcgccaacctggaccccgta
caactatccggcaccattgtgaaacgtgcctccctgcacaatgcagatattatcgagggg
ttggatctgcatataggcgacatggtgtatgtggaaaaaggcggtgaaatcatccccaaa
ataaccggtgtcgataaggatgcccgcagtatgcttatcggtgaaaaagtgaaattcatc
acccattgtcccgaatgcggcagcaaactgatacgttttgaaggagaagcagcccactat
tgccccaatgaaaccgcttgccctccgcagattaaagggaagatagagcatttcatcagc
cgcaaagccatgaatatagacggactgggacctgaaactgtagatatgttctaccgattg
ggactgataaaagatactgcagatttataccggctcaaaaccgacgacatcaagaacctg
gaacggatgggcgaaaaatcggcagaaaacatagtcaacggtattgcggcaagtaaagaa
gtgccattcgaaagagtgctctttgcactgggcatacgcttcgtgggagaaacggttgcc
aagaaaatagccaagtcctttatggacatcgaagagctggaaaacgcagacctcgaaaag
ctgaaaaacatcgatgaaatcggtgaaaaaatagcgcagagcattataacttacttctcc
aatcctaccaacagagagctggtggaacggctgaaatcgaacggtctgcaactccaccgg
acagaagaagacctcagcggatacaccgacaaactggcgggccagtccatcgtcatcagc
ggcgtattcacccaccactcacgggacgaatacaaagagatgattgaaaagaacggtgga
aaaaacgtcggaagtatctcctccaaaaccagctttatcctggccggagaaaatatggga
cctgccaaactggagaaagcgcagaaactgggagtaaagattatgagcgaagatgagttt
ttggcattgctatcctaa
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