Bidens hawaiensis: 143578261
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Entry
143578261 CDS
T11418
Name
(RefSeq) 110 kDa U5 small nuclear ribonucleoprotein component CLO
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
bhw Bidens hawaiensis
Pathway
bhw03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bhw00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
143578261
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bhw03041
]
143578261
Spliceosome [BR:
bhw03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
143578261
Complex C
U5 SnRNP specific factors
143578261
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
MMR_HSR1
Roc
EF-G_D2
SRPRB
Motif
Other DBs
NCBI-GeneID:
143578261
NCBI-ProteinID:
XP_076918010
LinkDB
All DBs
Position
Unknown
AA seq
987 aa
AA seq
DB search
MDDSLYDEFGNYIGPEIESDQESDREDEDEDIQDKISERADSDEENAAAGPNGWLTNGED
VDMDNQIVLAEDKKYYPTAEEVYGEDVETLVMDEDEQPLELPIIKPVRDIKFEVGVKDSS
TYVSTQFLLGLSSNPTLVRNVALIGHLQHGKTVFMDMLVEQTHHISTFDQNSEKHMRYTD
TRVDEQERRISIKAVPMSLVLEDSNSKSYMCNIMDTPGHVNFSDEMTAALRLADGAVLIV
DAAEGVMVNTERAIRHAIQDRLPLVVVINKVDRLITELKLPPKDAYHKLRHTIEVINNHI
TAVSSTAGNVQAIDPAAGNLCFASGSAGWCFTLQSFAKLYVKLHGIPFDANKFASRLWGD
YYYDPATRTFKKKQPASGAERSFVQFILEPLYKIYSQVIGEHKKSVETTLAELGVTLSNA
AYKLNVRPLLHLACSSVFGSATGFTDMLVHHIPSAKEAASKKVDHIYTGPRSSRLCTAMS
NCDPSGPLMVNITKLYPKSDCSVFDAFGRVYSGEIHTGQTVRVLGEGYSPDDEEDMTVKE
VTKLWVYQARYRIPINKAPPGSWVLIEGVDASIMKTATLCDSKYDDDVYIFRPLQFNTLP
VVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKDLRE
LYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLERGLAEDIENGVVS
VDWPKKKLGDFFQKKYDWDLLAARSIWAFGPDKQGPNILLDDTLSSEVDKSLLNSVKDSI
VQGFQWGAREGPLCDEPIRNVKFKIVDAKIAPEPLHRGTGQIIPTARRVAYSAFLMATPR
LMEPVYYVEIQTPIDCVSAIYTVLSRRRGHITADVPQPGTPAYIVKAFVPVIESFGFETD
LRYHTQGQAFAVSTFDHWAIVPGDPLDKSIVLRPLEPAQIQYLAREFMVKTRRRKGMSED
VSVNKFFDEAMVVELAQQDADLHQQMI
NT seq
2964 nt
NT seq
+upstream
nt +downstream
nt
atggatgacagtttatatgatgagtttggaaactacattggaccagaaattgagtctgat
caagagagtgatagagaggatgaagatgaggatattcaagataagatatccgaaagggct
gattctgatgaagagaatgcagctgcgggacccaacgggtggttaactaacggtgaagat
gttgatatggacaatcagattgttcttgcagaggataagaagtattatcctactgcagaa
gaggtttatggtgaggatgtagaaacccttgttatggatgaagatgaacaaccacttgaa
ctaccgattattaagcccgttagggatattaagtttgaagttggtgttaaagattcatcc
acttatgtttcaacccaatttctcttgggtctttcgtcaaaccctactttggttaggaat
gttgctttgattggtcacctgcagcacgggaaaacggttttcatggatatgttggttgag
caaacgcatcatatttctacttttgatcaaaacagtgagaagcatatgagatacactgat
acaagagttgatgagcaggagagaagaatatcaatcaaagcagttcctatgtcacttgtt
cttgaagatagcaattctaaatcttatatgtgtaatattatggatacaccaggacatgtt
aatttttctgatgagatgacagctgctcttcggcttgctgatggtgctgtgttgattgtt
gatgctgctgaaggagtcatggtgaacacagaaagagcaattcggcatgcaattcaggac
cgtctacctctagtagttgtgataaacaaggttgatagattaattactgagcttaaacta
cctccaaaagatgcttatcataagttgagacatacaattgaagtcatcaataaccacata
actgcagtctcttcgacagctggcaatgttcaggccattgatccggctgctggaaatctt
tgttttgctagtggtagtgcagggtggtgcttcactttacaatcatttgcaaagctatat
gtcaagcttcatggaataccttttgatgccaacaagtttgcatctagactttggggagat
tactattatgaccctgctactagaaccttcaaaaagaaacaacctgcaagcggggcagaa
cggtcatttgtacaattcatcctcgaacccctctacaagatttacagccaagttattgga
gaacataaaaagagtgtggaaacaacattagcagaactcggggtcactttaagcaatgct
gcttacaaattgaatgtaagacctttgcttcatttagcttgcagctcggtttttgggtca
gccaccgggttcaccgacatgctggttcaccacatcccgtctgctaaagaggccgcatct
aaaaaagttgaccatatttacaccgggcctagaagttcaagactctgcactgccatgtca
aattgtgacccatctggtccactcatggtcaacattaccaaactgtatccaaaatccgac
tgtagcgtttttgatgcgtttggaagggtttatagtggagaaatccatacgggtcagacc
gttcgtgtacttggagaaggttattcacctgatgatgaagaggatatgactgtaaaagaa
gtaacaaaactatgggtttatcaagcccgttacaggatacctattaacaaggcaccacct
ggctcgtgggtacttattgaaggtgttgatgcttccattatgaaaactgctacactttgt
gactcaaaatatgatgatgatgtgtacatattcaggcctctacagtttaacactcttcct
gtggtgaaaactgcaactgaaccgttaaaccctagcgagttaccgaaaatggttgagggt
cttagaaagattagcaaaagttatccgttagcgattactaaagttgaagagtcgggagaa
catactattctaggtactggtgagttgtatcttgattctataatgaaggatctcagagaa
ctatattcagaagtcgaagtcaaggtggcagatccagttgtttcattttgtgaaacggtg
gtggagtcctcgtcaatgaaatgctttgctgaaacgcctaacaagaaaaataaaattacc
atgattgctgaaccattggagagaggacttgcagaagatattgagaatggtgttgttagt
gtggactggcccaaaaagaagcttggtgacttcttccaaaaaaaatatgactgggatctg
cttgctgcaagatccatatgggcttttgggcccgacaagcagggacctaatattttgctg
gatgatactctctcaagtgaagtcgacaaaagtttgttgaattctgtcaaggattcaatt
gttcaagggttccagtggggtgcacgtgagggtcctctctgtgacgagccgattcgtaac
gtcaagttcaaaatagttgatgcgaaaattgcacccgagccactacatcgcgggactggt
caaatcattccaactgctcgacgtgtggcctactcagcttttcttatggctacaccgcgt
ctaatggagcccgtatattatgtcgagatacaaacacctatcgattgtgtttctgctata
tacacggtgttgtctcgaaggcgtgggcatataactgctgatgtacctcaaccaggaacc
cctgcttatatcgtcaaggcgtttgttcctgtaatcgagtcgtttggttttgagacggac
ttgcggtatcacacccaaggacaggcgtttgcggtttcaacttttgatcactgggccatt
gtacctggtgatccattggataaaagtattgtgctacgcccgctcgagccagcacagatt
cagtatcttgcacgtgagttcatggtaaaaacaaggcgtaggaagggtatgagtgaggat
gtgagtgttaacaagttcttcgatgaggctatggtagtggagctagcccaacaggatgct
gatttgcaccagcagatgatctag
DBGET
integrated database retrieval system
