Bordetella hinzii: ACR54_03353
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Entry
ACR54_03353 CDS
T04004
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bhz
Bordetella hinzii
Pathway
bhz03030
DNA replication
bhz03410
Base excision repair
bhz03420
Nucleotide excision repair
bhz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bhz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ACR54_03353 (ligA)
03410 Base excision repair
ACR54_03353 (ligA)
03420 Nucleotide excision repair
ACR54_03353 (ligA)
03430 Mismatch repair
ACR54_03353 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bhz03032
]
ACR54_03353 (ligA)
03400 DNA repair and recombination proteins [BR:
bhz03400
]
ACR54_03353 (ligA)
Enzymes [BR:
bhz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ACR54_03353 (ligA)
DNA replication proteins [BR:
bhz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ACR54_03353 (ligA)
DNA repair and recombination proteins [BR:
bhz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ACR54_03353 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ACR54_03353 (ligA)
MMR (mismatch excision repair)
DNA ligase
ACR54_03353 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ACR54_03353 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
BRCT_2
DUF2116
Motif
Other DBs
NCBI-ProteinID:
AKQ56655
UniProt:
A0AAN1RXF4
LinkDB
All DBs
Position
complement(3493030..3495114)
Genome browser
AA seq
694 aa
AA seq
DB search
MAGNAAERAARLRAEIAQHNVRYYVYDDPTVSDAEYDALMRELTALETEHPELVTPDSPT
QRVGAAPLAEFGSVRHAVPMLSLGNGFEDEDVHAYDKRVSDTLRGAGLLGPAEQAHYFCE
LKLDGLAISLRYENGELVQAATRGDGQTGEDVTANIRTIKAIPLKLKGRAPAVLEVRGEV
LMNRAEFEKLNQKQAARGEKVFVNPRNAAAGSLRQLDPRITAQRPLRFFAYSWGEVQGLP
SGLTEAFDETAPGMGAASTLPRDTHGGMLQWLSELGLPVNVRFNHKAQGAEGLLAFYRRI
GAERAGLPYDIDGVVYKVDSLAAQRVLGFVARAPRWALAHKFPAEEATTDLLDIEVQVGR
TGAITPVARLKPVFVGGVTVTNATLHNEDEIRRKDVRVGDVVVVRRAGDVIPEVVGPVLE
KRGGELPLFVMPTHCPICGSAIERLEDEAIARCTGGLFCPAQRKQTLLHAAGRKALDIEG
LGEKLVEQLVDNGRLKTLADVFTLDAFELAALDRMGKKSAENLVAAIDRARQPSLGRLLF
ALGIRHVGETTARDVARHFGSIDKIMDADEQALLAVPDVGPVVAGSIHRFFREAHNRDVV
HQLEKQGVAPQAEAQPQGGSLAGKTFVLTGTMPNWSRDEATRHILAAGGKVSGSVSKKTS
YVVAGEEAGSKLVKAQELGLAILDEDGLKALLGQ
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atggccggcaacgccgccgaacgtgccgcccgcctgcgggccgagatagcgcagcacaac
gtccgctactacgtctacgacgaccccacggtttccgatgccgaatacgacgcgctgatg
cgcgagctgaccgcgctggaaaccgagcatcccgaattagtcacgccggactcgcccacg
cagcgcgtgggcgccgcgcccctggccgagttcggcagcgtgcggcacgccgtgcccatg
ctctcgctgggcaatggtttcgaggacgaggacgtccatgcctacgacaagcgcgtgagc
gataccctgcgtggcgccggcctgctgggcccggccgagcaggcgcattatttctgtgaa
ctcaagctcgacggcctggcgatcagcctgcgctatgaaaacggcgagctggtccaggcg
gccacccgcggcgatggacagaccggcgaagacgtcaccgccaatatccgtacgatcaag
gccatcccgctcaagctcaagggccgggcgccggccgtgctcgaagtgcgcggcgaggtc
ttgatgaaccgcgccgaattcgaaaagctcaaccagaaacaggccgcgcgcggcgaaaag
gtcttcgtcaatccgcgcaacgcggccgccggcagcctgcgccagctggacccgcgcatc
acggcgcagcggccgctgcgctttttcgcctatagctggggcgaggtccagggcctgccc
tccggcctgaccgaggccttcgacgaaaccgcgcccggcatgggcgcggcctccacgctg
ccgcgcgacacccatggcggcatgctgcagtggctgtccgagctcggcctgccggtcaat
gtgcgcttcaaccacaaggcgcagggcgccgagggcctgctggccttctaccgccgcatc
ggcgccgagcgcgccggcctgccttatgacatcgacggcgtggtctacaaggtcgattcg
ctggccgcgcagcgcgtgctgggtttcgtggcccgcgccccgcgctgggcgctggcccat
aaattcccggccgaggaagccaccaccgatttgctggatatcgaagtccaggtggggcgc
acgggcgccatcacgccggtggcgcggctcaagcccgtcttcgtcggcggcgtcaccgtc
accaacgccacgctgcacaacgaagacgagatccgccgcaaggacgtgcgcgtgggcgat
gtggtcgtggtgcgccgcgccggcgacgtgatccccgaagtggtcggccccgtgctcgag
aagcgcggcggcgagctgcctttattcgtcatgcccacgcattgcccgatctgcggctcg
gccatcgagcgcctggaagacgaggccatcgcgcgttgcaccggcggcctgttctgtccg
gcgcagcgcaagcagacgctcctgcacgccgccggccgcaaggcgctcgacatcgaaggc
ctgggcgagaagctggtcgagcagctggtggacaacggccgcctcaagaccctggccgat
gttttcacgctggatgccttcgagcttgccgcgctggaccgcatgggcaagaagtcggcc
gaaaacctggtggccgccatcgaccgggcgcgccagccctccctgggacgcctgctcttt
gccttgggcatacgccatgtgggcgagaccacggcccgcgacgtggcgcgtcatttcggc
agcatcgacaagatcatggatgccgacgagcaggccctgctggccgtgccggatgtcggc
ccggtggtcgccggctccatccaccgttttttccgcgaggcgcacaatcgtgacgtcgtg
caccagctggaaaagcagggcgtggcgccgcaggccgaagcccagccgcaaggtggcagc
ctggcgggcaagaccttcgtgctgaccggcaccatgcccaattggagccgcgacgaggcc
acgcgccacatcctggccgccggcggcaaggtcagtggttcggtatccaagaagacctcc
tatgtggtggccggcgaagaggccggcagcaagctcgtcaaggcgcaggaactgggcctg
gccatcctcgacgaagacggcctgaaggccttgctggggcaatag
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