Bizionia sp. M204: GMA17_02385
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Entry
GMA17_02385 CDS
T08096
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bia
Bizionia sp. M204
Pathway
bia03030
DNA replication
bia03410
Base excision repair
bia03420
Nucleotide excision repair
bia03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bia00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GMA17_02385 (ligA)
03410 Base excision repair
GMA17_02385 (ligA)
03420 Nucleotide excision repair
GMA17_02385 (ligA)
03430 Mismatch repair
GMA17_02385 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bia03032
]
GMA17_02385 (ligA)
03400 DNA repair and recombination proteins [BR:
bia03400
]
GMA17_02385 (ligA)
Enzymes [BR:
bia01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GMA17_02385 (ligA)
DNA replication proteins [BR:
bia03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GMA17_02385 (ligA)
DNA repair and recombination proteins [BR:
bia03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GMA17_02385 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GMA17_02385 (ligA)
MMR (mismatch excision repair)
DNA ligase
GMA17_02385 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GMA17_02385 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH_5
PTCB-BRCT
BRCT_2
Auto_anti-p27
LbR_Ice_bind
HVO_2753_ZBP
Motif
Other DBs
NCBI-ProteinID:
UPS90632
LinkDB
All DBs
Position
520051..522045
Genome browser
AA seq
664 aa
AA seq
DB search
MSIQEQIEALRDELRQHNYNYYVQDNPTISDFEFDVKLKQLQELEAKHPEFYDASSPTLR
VGGEITKNFETVAHEHRMYSLENSYSKEDLLDWETRIKKMVDGAISYTCELKYDGASISL
TYENGKLRKAVTRGDGFQGDNVTANIKTIKSVPLQLKGDYPEKFDIRGEIVLPFEGFIKM
NEERIEIGEEPYRNPRNTASGSLKLQDSSEVAKRPLDCLLYNITGNNLNIKTQFESLEKA
RSWGFKVPEIAKEVNSMDAVLEFIAHWDIHRHNLPYETDGVVIKVNDLQQQEELGYTAKA
PRWAMAYKFKAEQVSTRLNEITYQVGRTGAITPVANLEPVELAGTTVKRASLHNADQIEK
LDIREGDMVFVEKGGEIIPKIIAVDLSQRPADSQPTQYITHCPECNTALVRQEGEAQHYC
PNYNGCKPQIIGRIQHFISRKAMDIDGLGGETVALLVNAGLILNYSDLYELTIEDVLPLE
RMAQKSAENLLNGIQASKDVPFERVLFALGIRYVGETVAKKLVKHYKTIGAIANATAIDL
VTVDEIGVRIAESVTDFFQIQTNIEIVERLIRFGVQMEISAEKLANQTNKLEGQAFVVSG
VFHVVSRNELKKLIEDNGGKVSSSISSKTNFVVAGDNMGPSKKEKADSLGISIISEQDFL
SMIS
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgagtatacaagaacaaatagaagcattacgagacgaattgcgtcagcataattacaat
tattatgtacaagacaatcccactatttctgattttgaatttgatgtaaaactcaagcaa
cttcaagaacttgaagcaaaacatccagaattttatgatgctagttcacctaccttacga
gttggtggtgaaataaccaagaattttgaaacggttgctcatgagcatcgtatgtattcc
ctagagaattcgtactctaaagaggatttgctagattgggaaacgcgaattaaaaaaatg
gtagatggcgctattagttatacgtgcgagttaaaatatgatggagcatctatcagtctc
acttatgaaaatggaaaattacggaaagcagttactagaggtgacggttttcaaggtgat
aatgtaacggctaatattaaaaccattaagtctgttcctttgcagttgaagggtgattat
ccggagaaatttgatattcgtggcgaaatagttttaccttttgaaggctttattaaaatg
aatgaagagcggatagaaataggagaggaaccttacagaaatccgcggaatacagcctct
ggtagtttaaagttacaagatagtagtgaagttgctaaacgaccgttagactgtttgttg
tataatattacaggaaataatctcaatataaaaacccaatttgaaagcttggaaaaagca
cgctcttggggatttaaagttcctgaaatagcaaaagaagtaaattccatggatgcggtt
ttagaatttattgcgcattgggatattcatcgacacaatttgccttatgaaaccgatggt
gttgttattaaggtgaatgatttgcaacaacaagaagaattaggctatacggctaaagca
ccacgatgggctatggcttataaatttaaagccgaacaagtttctacccgactcaatgaa
attacatatcaagttggtagaacgggagctattacaccggttgctaatttagaacctgta
gaattggctggaactaccgtaaaacgagcatcactgcataacgcagatcaaattgaaaaa
ttagatattcgtgaaggtgatatggtttttgttgaaaaaggcggcgaaattattcctaaa
ataattgctgtcgatttaagtcagcgtccagcagattcacaacccactcagtatattacg
cattgtccagaatgtaacaccgctttagttaggcaagagggggaagcacaacattattgt
ccaaattacaatggttgtaaaccacaaattattggtagaatccaacattttattagtagg
aaagcaatggatattgatgggttgggaggagaaactgttgccttattagttaatgctgga
ttgattttaaattattcggatttatatgaattaaccatagaagatgttttgccattagaa
cggatggcacaaaaaagtgccgaaaatttattaaatggtattcaagccagtaaagacgtt
ccgtttgaacgtgttttatttgctctaggcattagatatgtaggtgaaactgtagctaaa
aaattagtaaagcattataaaacaattggcgctatagcgaatgcaacagctattgatttg
gtaactgttgatgaaattggtgtacgaatagcagaaagtgtaaccgattttttccaaata
caaacaaatattgaaattgttgaacggttaatacgatttggtgtgcaaatggaaatttca
gccgaaaaattagccaatcaaacgaataaattagaaggtcaagcgttcgtagtatcaggt
gtttttcatgtcgtttctagaaacgaattaaagaaactgattgaggataatggaggtaaa
gtatcatcatcaatctcatctaaaacaaattttgtggttgctggtgataatatggggccc
agcaaaaaagaaaaagcagattctttaggtatttccattatatcggaacaagatttttta
agtatgatttcatga
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