Bradyrhizobium icense: LMTR13_31480
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Entry
LMTR13_31480 CDS
T04485
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bic
Bradyrhizobium icense
Pathway
bic03030
DNA replication
bic03410
Base excision repair
bic03420
Nucleotide excision repair
bic03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LMTR13_31480
03410 Base excision repair
LMTR13_31480
03420 Nucleotide excision repair
LMTR13_31480
03430 Mismatch repair
LMTR13_31480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bic03032
]
LMTR13_31480
03400 DNA repair and recombination proteins [BR:
bic03400
]
LMTR13_31480
Enzymes [BR:
bic01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LMTR13_31480
DNA replication proteins [BR:
bic03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LMTR13_31480
DNA repair and recombination proteins [BR:
bic03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LMTR13_31480
NER (nucleotide excision repair)
GGR (global genome repair) factors
LMTR13_31480
MMR (mismatch excision repair)
DNA ligase
LMTR13_31480
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LMTR13_31480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
ANW03993
UniProt:
A0A1B1UMT6
LinkDB
All DBs
Position
complement(6806910..6809060)
Genome browser
AA seq
716 aa
AA seq
DB search
MAKTAKTKTPTDVAKLTTAQAKVEHMRLALELEGHDRRYYQEDAPSISDAEYDALRQRFN
AIEKRFPELVTAESPSQKIGAAPLGRFRKVRHAVPMLSLDNAFAEQDVLDFIGRIERFLK
LSDDKIDFSAEPKIDGLSMSLRYEGGELITAATRGDGAEGEDVTANIRTLEDVPQKLKGR
NVPDVCEVRGEVYMTKKAFLALNERQKAAGDTIFANPRNSAAGSLRQKDPSITASRPLGF
FAYSWGQMSAMPEKTQTGMIHWFERCGFKTNPLTKLCHSVEHLIAFHHQIEEQRGELDYD
IDGVVYKIDRIDWQERLGFVSRTPRWAIAHKFPAERAMTVLRDIEIQVGRTGSFTPVGKL
EPVGVGGVIVQNVTLHNEDYIKGIGNKGEVLREGRDIRLGDTVVIQRAGDVIPQVVDVVI
DKRPKDAKEFHFPKKCPCPLHTDVVREETATGEEGSRARCTGEFACPFQKIEHLKLFVSR
RAFDIDGLGEKQLQYFFDREWVREPADIFTLPKRNAKLKLEEIEGYGETSVRNLFAAIDS
RRRISLERFIYALGMRHVGETTALALARGYGSWDAFHDACLKVAKGDEETIAEMDALDQI
GDTVIKSVAAYFGESHNRGIVERLVKELNEIIDAEKPKSNSAVAGKTVVFTGSLEKMTRD
EAKATAERLGAKAAGSVSKKTDYVVAGPGAGSKLAEAKKHGVPVLTEDEWLKLIGE
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atggccaagacagcgaaaacaaaaacccccaccgacgtcgccaaactcaccacggcccag
gccaaggtcgagcacatgcggctggcgctggagctcgaagggcacgacaggcgctattat
caggaagatgcgcccagcatcagcgatgccgaatacgacgccttgcggcagcgcttcaat
gcgatcgaaaagcggtttcccgaactcgttacagcggaatcgccgtcgcaaaagatcggc
gcggcgccattgggccgtttcaggaaagtccggcatgcggtgccgatgctgtcgctcgac
aacgccttcgccgagcaggacgtgctcgacttcatcggccgcatcgagcgctttctcaag
ctaagcgacgacaagatcgatttttccgccgagccgaagatcgacgggctctcgatgtcg
ctgcgctacgagggcggcgaactcatcactgccgccacccgtggcgacggcgcggaaggg
gaggacgtcaccgccaatatccggacgctcgaggacgtgccgcagaagctgaaaggccgc
aacgttcctgatgtctgcgaggtgcgcggcgaggtctacatgaccaagaaggcgttcctc
gcgctgaacgagcggcagaaggccgcaggcgacaccatctttgcaaacccgcgcaattcg
gctgccggctcgctgcgtcagaaggatccctccatcaccgcctcgcgcccgctcggcttc
ttcgcctattcctggggccagatgagcgcgatgccggaaaagactcaaaccggcatgatc
cactggttcgagcgctgcggcttcaagaccaatccgctgacaaaactttgccactccgtc
gagcacctgatcgcgttccatcaccagatcgaggagcagcgcggcgagctcgactacgat
atcgacggcgtcgtctacaagatcgaccgtatcgactggcaggagcggctcggcttcgtc
tcgcgcacgccacgctgggcgattgcacacaaattccccgccgagcgggccatgacggtg
ctgcgcgacatcgagatccaggtcgggcgcaccggttcgttcacgccggtcggcaagctc
gagccggtcggcgtcggcggcgtcattgtgcagaacgtcacgctgcacaatgaggactac
atcaagggtatcggcaacaagggcgaagtgctgcgcgagggccgtgacatcaggctcggc
gacaccgtcgtgatccagcgcgccggcgatgtgatcccgcaggtggtcgatgtcgtcatc
gacaagcggccgaaggacgcaaaggaatttcatttcccgaagaagtgcccgtgcccgttg
cataccgacgtggtgcgcgaggagaccgcgaccggcgaagaaggctcgcgcgcccgctgt
accggcgagttcgcctgtccgttccagaagatcgagcacttgaagctgttcgtgtcgcgc
cgggccttcgacatcgacgggctcggcgagaagcagctccagtacttcttcgaccgcgaa
tgggtgcgggagccggccgatatctttacgctgccaaaacgcaacgccaagctgaagctc
gaagaaatagagggctatggcgaaacctcggtgcgcaacctgtttgcggcgatcgacagc
cgccgccgcatctccctggaacgcttcatctatgcgctcggcatgcgccatgtcggcgag
accacggcgcttgcgctcgcgcgcggctacggttcgtgggatgccttccacgatgcctgc
ctcaaggtcgccaagggcgacgaggaaaccattgccgagatggatgcgctcgaccagatc
ggcgacaccgtgatcaagagcgtcgccgcctatttcggcgaaagccataaccgcggcatc
gtcgagcgcctggtcaaggagctcaacgagatcatcgacgccgaaaagcccaagagcaat
tcggccgtcgccggcaagaccgtggtgttcaccggctcgctggaaaagatgacgcgggac
gaagccaaggccaccgctgagcggctgggcgcaaaggctgcgggttcggtgtcgaagaag
acggattacgtcgtcgcagggccaggggcgggttcaaaactcgcggaggccaagaagcac
ggcgtgccggtgctgaccgaggacgagtggctgaagctgatcggggagtga
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integrated database retrieval system
