Bengtsoniella intestinalis: RFF05_17560
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Entry
RFF05_17560 CDS
T10691
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bie Bengtsoniella intestinalis
Pathway
bie03030
DNA replication
bie03410
Base excision repair
bie03420
Nucleotide excision repair
bie03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bie00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RFF05_17560 (ligA)
03410 Base excision repair
RFF05_17560 (ligA)
03420 Nucleotide excision repair
RFF05_17560 (ligA)
03430 Mismatch repair
RFF05_17560 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bie03032
]
RFF05_17560 (ligA)
03400 DNA repair and recombination proteins [BR:
bie03400
]
RFF05_17560 (ligA)
Enzymes [BR:
bie01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RFF05_17560 (ligA)
DNA replication proteins [BR:
bie03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RFF05_17560 (ligA)
DNA repair and recombination proteins [BR:
bie03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RFF05_17560 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RFF05_17560 (ligA)
MMR (mismatch excision repair)
DNA ligase
RFF05_17560 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RFF05_17560 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
PTCB-BRCT
DNA_ligase_ZBD
Nlig-Ia
BRCT_2
HHH
COMM_HN
SpoOE-like
DUF6883
Motif
Other DBs
NCBI-ProteinID:
XAY15556
LinkDB
All DBs
Position
3695357..3697330
Genome browser
AA seq
657 aa
AA seq
DB search
MDYKREIAQLRTQLHQMGYEYYVLDDPKVSDFEYDRLLHRLEELEAEHPEEVTADSPTQR
IGGKLLEGFQEYAHDVPLESLQDVFSPEEVAIFCEKMSQSLGEVAYSVEPKVDGLSVALE
YRNGVFFKGATRGDGRVGEDVTENVRTIRSIPMVLPDKLPRLIVRGEVFMGKEVFAKLNA
QREENGEALFANPRNAAAGSMRQLDPQVVAKRQLDILVFNLQLSEGKTFASHSESLDYLR
SQGFKVIANKLLTSENACQQEIINIDQTRHDVAFDIDGAVIKVDSLAQREILGSTAKNPK
WAIAYKYPPEQKEATLLDIVIQVGRTGVLTPRAVLSPVHLAGTTVQSATLHNADFIAEKD
IRIGDTVMVQKAGEIIPEIVSVVTKNRPEGLEPYQFPTSCPVCGADVHRDEDGVAIRCTG
AECPAQLLRNITHFASRDAMDIEGLGQAVVQLLVESELIATVADLYTLDPQQVANLERMG
EKSALNLVSALEESKQRDLSRLLFGLGIRQVGVKAAQSLAKHYGTMEALQTTTLEELVAI
DDVGAITAQGILDYFAAEQSQDLIQKLKDAGVNMTATKTQVDDRFAGMTFVLTGTLSKVD
RKTGEAMVVERGGKAAGSVSKKTTYVVAGESAGSKLQKAETLGIPVLTEDEFLAMME
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atggattacaaaagagaaattgcccagttgcgtacccagttacaccaaatgggctatgaa
tattacgtgttagatgacccgaaagtgtcggattttgaatatgaccgtttgctccaccgt
ttggaagaattggaagcagagcacccagaagaggtgaccgccgactctcccacccaacgc
atcggtggcaagttgttggaagggttccaagaatatgcccacgatgtgcccttagaaagt
ttgcaagatgtgttttctccagaagaagtggcgattttttgcgaaaaaatgtctcaatct
ttgggagaagtggcatatagcgtagagcccaaagtggatggcttgtcggtggcgcttgaa
taccgcaacggtgtgtttttcaaaggtgccacccgtggggacggtcgtgtgggggaggat
gtgacggaaaacgtccgcaccatccgctccattcccatggtcttgccagacaaattacca
cggctcatcgtccgtggggaagtgttcatgggcaaggaagtgttcgccaaattgaatgcc
caacgagaagaaaatggggaggctttgttcgccaatccacgcaatgccgccgcaggttct
atgcgccaattagacccccaagtggtggcaaaacggcagttggatatactggtttttaac
ctccaactctctgaaggcaagacctttgccagtcacagcgaaagcttggactatttgcgg
agtcaagggtttaaagttattgcaaataagttgctgacaagtgaaaacgcttgtcagcaa
gaaatcatcaatattgaccaaacacgccatgatgtggccttcgacattgacggtgcggtc
atcaaagtggatagtcttgcccaacgggaaatcttgggcagtaccgccaaaaatcccaag
tgggcgatcgcctacaaatatcctcccgaacagaaggaagccacccttttggacattgtg
attcaagtgggacggactggggttctgacccctcgtgcggtgttgtctcctgtccatttg
gcaggcaccaccgtccaaagtgccaccttgcacaatgcagattttattgcggaaaaggac
attcgcattggcgataccgtcatggtgcaaaaggcaggggagattatcccagaaattgta
tctgtggtgacgaaaaaccgcccagaaggactagagccatatcaattcccaacttcttgt
cctgtttgcggtgcagatgtccatcgagatgaagatggggttgccatccgctgcactggt
gcggaatgcccagcccaattactccgcaacatcacccattttgcctcccgtgatgccatg
gatattgagggtttggggcaagcggtggttcagttgttggtggaaagcgagctaattgcc
actgtagcggatttgtataccttagacccccaacaagtggcgaatttagagcggatgggt
gaaaaatccgcattaaatttggtgtctgccttggaagaaagtaaacagcgtgacttgagc
cgactgctgttcggcttgggcatccgccaagtgggtgtaaaagccgcccaatctttggca
aagcactacggcaccatggaagctttgcagaccaccaccttggaagaactggttgccatc
gacgatgtgggtgccatcacggcacaagggattttggactatttcgccgccgagcagtct
caagatttaatccaaaagctgaaggatgctggggtcaatatgaccgccaccaaaacccaa
gtggacgaccgttttgcaggcatgacctttgtgctgacaggcaccttgtccaaggttgac
cgcaaaacaggggaagccatggtggtggaacgggggggcaaagccgcaggctctgtgtcc
aagaaaaccacttatgtggtggctggtgaatccgcaggctctaagctgcaaaaggcggaa
acactggggattcccgtattgacggaagatgaattcttggcaatgatggagtaa
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