KEGG   Bifidobacterium indicum: BINDI_0841
Entry
BINDI_0841        CDS       T03564                                 
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
bii  Bifidobacterium indicum
Pathway
bii03030  DNA replication
bii03410  Base excision repair
bii03420  Nucleotide excision repair
bii03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:bii00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    BINDI_0841
   03410 Base excision repair
    BINDI_0841
   03420 Nucleotide excision repair
    BINDI_0841
   03430 Mismatch repair
    BINDI_0841
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bii03032]
    BINDI_0841
   03400 DNA repair and recombination proteins [BR:bii03400]
    BINDI_0841
Enzymes [BR:bii01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     BINDI_0841
DNA replication proteins [BR:bii03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     BINDI_0841
DNA repair and recombination proteins [BR:bii03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     BINDI_0841
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     BINDI_0841
   MMR (mismatch excision repair)
    DNA ligase
     BINDI_0841
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      BINDI_0841
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD PTCB-BRCT HHH_5 HHH Nlig-Ia BRCT_2
Other DBs
NCBI-ProteinID: AIC92111
UniProt: A0A087VUU6
LinkDB
Position
complement(1117621..1120218)
AA seq 865 aa
MRSEEDEYTGGGTGYEGASEERPAIGSDRWIASLQPDDADAMRLGELDAGSLSAEAAQRL
WSKLAAWVESDQVAYYIDDAPVSSDAAYDARMRCLQELESSFPSLDTPQSPTHRVGGTFS
NDFTSVRHPSRMLSLDDVFSINELRQWYDGIRKDLDWPEDKALAMTSEVKIDGLALNLLY
HNGVLEQGLTRGDGVTGEDITLNVRTIQTIPQNLSGPAEDIPEFVEVRGEVFMRFDDFQA
LNEQQAKEGKPPFANPRNAAAGSLRQKDPRITATRRLSFYAHGMGSLRWGAAHPKGSHDE
VIDQSQAYGLYKQWGIPVSPHNRVVASFDQILDMIDYYGQHRNDIEHALDGIVVKLQDRD
LQRRLGTTSRAPRWAVAYKYPPEEVNTRLLDITVQVGRTGRITPVAILTPVSVAGSTVSR
TTLHNASEVKRKGILIGDTVVVRKAGDVIPELVGPVMEARKGREKDLKSFVMPETCPSCG
ARLAPAKEGDVDIRCPNVESCPAQLTERVIHMASRKALDIEHLGEQSAIALTNPDENRPD
SVDVYAPGLREVLVDQGGQAAPYQPAPDLELPPRQSPVLTSEAGLFDLKVDDLRHVHVWR
EVPLMEQVEVEGKDGPATSKRRVGGSGLWYRVPAFYNLPKSDQAAQGDRAMNSHEVQAED
AALGKAGAEPSRTTLQMLQEIDKARHADLWRVLVALSIRHLGPTSARAIATRFPSLDAIE
HAGIDELSELDGVGPEIASSIVDWFSGARQPGDWRGKILDAWKADGVGSHVERSTKPQTL
KGMTVVVTGSLEDFSRDSAKEAIVERGGKASGSVSKKTTYVVVGDSPGSKAEKAESLGVP
ILDEAAFHRLLDTGSPDGQADQAEG
NT seq 2598 nt   +upstreamnt  +downstreamnt
atgcgtagcgaagaagacgaatatacgggcggtggaaccgggtacgagggtgcctcggaa
gagaggccggcaatcgggagtgaccgctggatagcatcactgcaacccgatgatgccgat
gccatgcggctgggtgagctggatgccggttccctgagcgccgaggcggcccagcgtctc
tggtccaagctggcggcctgggtcgagtcggaccaggtggcctattacatcgatgatgct
ccggtctcttccgatgcggcctacgatgccaggatgcgctgtctccaggaattggagtca
agcttccccagcctggacaccccccagtctcccacccaccgggtaggcggaaccttctcc
aacgatttcacctccgttcgtcatccctcccggatgctcagcctggacgacgtattcagc
atcaacgaactccgccagtggtacgacggaatccgcaaggatctggattggcccgaagac
aaggcactcgccatgaccagcgaggtcaagatcgacgggctggccctgaacctcctctac
cacaatggggttctggagcaggggctgacccggggagacggggtgacaggcgaggacatc
accctgaacgtccgaaccattcagaccattccgcagaacctgtcggggccggccgaggac
atccccgagtttgtggaggtccgtggcgaggtcttcatgcggttcgacgatttccaggcc
ctgaatgagcagcaggcaaaggagggcaaacctccctttgccaatccgcgcaacgccgcc
gccgggtcgctgcggcagaaggacccccgcattacggcaacccgccgactgagcttctac
gcccatggtatgggctccctgcggtggggggcggcccaccccaaggggtcacatgatgag
gtcatcgaccagtcccaggcctatgggctctacaagcagtgggggattccggtttcaccc
cacaacagggtcgttgcctccttcgatcagattcttgacatgatcgactactacggacag
caccgcaacgacatcgagcatgccctggacggcatcgtggtcaagcttcaggacagggac
cttcagcgcaggctgggtaccacctcccgtgcaccccgctgggccgtcgcctacaagtat
ccgcccgaggaagtcaatacgagacttctggatatcaccgtccaggtgggcaggaccggg
cgaatcaccccggtggccatcctgacccctgtctccgtggccggttccacggtctcccga
accaccctccataacgcctctgaggtcaagcgtaaggggattctgattggcgacacggtc
gtggtccgtaaggccggtgacgtgattcccgagctggtcggtcccgtcatggaggccagg
aagggacgggaaaaggacctgaaatccttcgtcatgcccgagacctgccctagctgtggg
gcccgcctggccccggccaaggagggggacgtggatatccgctgccccaacgtggagtca
tgccccgcccagctgactgagcgtgtcatccatatggcctcccggaaggcgctggatatc
gagcacctgggggagcagagcgccatcgccctgaccaaccccgatgagaaccgccctgac
tccgtcgatgtctatgctcccggattgcgtgaggtcctggtggaccagggcgggcaggcg
gcgccctatcagcccgcacccgatctggagcttcctccccggcagagcccggttctgacc
agtgaggctggcctgttcgacctgaaggtcgatgacctgcgccacgtacatgtctggcgt
gaggttcccctgatggagcaggtcgaggtggaggggaaggacggacccgccaccagcaag
cgtcgtgtcggaggcagtggtctctggtaccgggtgcctgccttctacaacctccccaag
agcgatcaggccgcccaaggtgacagggccatgaacagccacgaggtccaggcggaggat
gccgccctgggcaaggccggtgcagaaccttcccgaaccactttgcagatgcttcaggaa
atcgacaaggccagacatgccgacctgtggcgggtcctggtcgccttgtccatacggcac
ctcggccccacctcggcacgggccatagccacccgcttcccctccctggatgccattgag
catgccgggatcgatgaactgtcggagctggacggggtcggccccgagatcgcctcctcc
atagtcgattggttctccggcgcccgccagccgggtgactggcgtgggaagattctggat
gcctggaaagcggatggtgtggggtcccatgtggagcgcagcaccaagccccagaccctg
aagggtatgacggttgtggtgaccggaagtctggaggacttctcccgggactcggccaag
gaggccatagtcgagcgcgggggcaaggcctcggggtcggtcagcaagaagaccacctat
gttgtggtcggggacagccccggttccaaggcggagaaggccgagagccttggtgtgccc
atccttgatgaggcggccttccaccgtctcctggatacaggcagtcccgatgggcaggct
gaccaggccgagggctga

DBGET integrated database retrieval system