Bacteroides intestinalis: DXK01_015825
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Entry
DXK01_015825 CDS
T06090
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bis
Bacteroides intestinalis
Pathway
bis03030
DNA replication
bis03410
Base excision repair
bis03420
Nucleotide excision repair
bis03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bis00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DXK01_015825 (ligA)
03410 Base excision repair
DXK01_015825 (ligA)
03420 Nucleotide excision repair
DXK01_015825 (ligA)
03430 Mismatch repair
DXK01_015825 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bis03032
]
DXK01_015825 (ligA)
03400 DNA repair and recombination proteins [BR:
bis03400
]
DXK01_015825 (ligA)
Enzymes [BR:
bis01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
DXK01_015825 (ligA)
DNA replication proteins [BR:
bis03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DXK01_015825 (ligA)
DNA repair and recombination proteins [BR:
bis03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
DXK01_015825 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DXK01_015825 (ligA)
MMR (mismatch excision repair)
DNA ligase
DXK01_015825 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DXK01_015825 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
RNA_pol_A_CTD
Auto_anti-p27
DUF1266
Motif
Other DBs
NCBI-ProteinID:
QDO70286
LinkDB
All DBs
Position
complement(4165748..4167745)
Genome browser
AA seq
665 aa
AA seq
DB search
MTAKEKIDQLRAELHRHNYNYYVLNAPEISDKEFDDMMRELQEMEREHPEYQDENSPTMR
VGSDLNKNFTQVTHKYPMLSLGNTYSEGEVSDFYDRTQKALNEDFEICAELKYDGTSISL
TYENGKLIRAVTRGDGEKGDDVTDNVKTIRTIPLVLHGDYPQLFEIRGEILMPWEVFEEL
NREKEAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYLLGEELPCDGHYENLQKA
AQWGFKISDHMKKCHSLQEVFDYIHYWDTERKNLPVATDGIVLKVNSLKQQKNLGFTAKS
PRWAIAYKFQAERALTRLNKVTYQVGRTGAVTPVANLDPVQLSGTIVKRASLHNADIIEG
LDLHVGDMVYVEKGGEIIPKITGVDKDARSMMVGEKVKFITHCPECGSKLIRYEGEAAHY
CPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDMFYRLGLIKDTTDLYKLTVDDIKNL
DRMGDKSAENIVKGIAQSREVPFERALFALGIRFVGETVAKKIAKSFTDIEELENADLER
LINIDEIGEKIAQSIISYFANPLNRELIERLKIAGLQFSRKEEDLSGYTDKLVGQSIVIS
GVFTHHSRDEYKDLIEKNGGKNVGSISAKTSFILAGENMGPAKLEKAQKLGVQIMSEDEF
LALIS
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgactgcaaaagaaaagatagatcagctccgtgccgaattgcatcggcacaactacaat
tattacgtgttgaatgctcccgaaatctctgacaaagagttcgacgacatgatgcgggaa
ttgcaggagatggagcgagaacatcctgaatatcaggatgaaaattcgccaaccatgcgc
gtaggaagcgatttgaataagaatttcacgcaagtgacacacaaatatccaatgctttcg
ttgggtaatacctattccgaaggtgaggtatccgacttttatgatcgcactcaaaaagcc
ctgaacgaagattttgaaatctgtgccgaacttaaatatgacggtacttccatctcgctg
acatacgaaaacggcaaattaatacgtgctgtaacccgtggtgacggtgaaaaaggcgat
gatgtaacagataatgtgaagacaatccgtactatcccccttgttttgcatggtgattat
ccccaattatttgagatcagaggggaaatactaatgccgtgggaagtctttgaggaacta
aaccgcgaaaaagaggcacgcgaagaacctcttttcgctaatccgcgtaatgctgcatca
ggcactttgaaattacaaaactctgctatagttgcttcccgcaaactggatgcctacctt
tattatttattaggagaagaacttccttgcgacggacattatgaaaacctgcagaaagct
gcacaatggggattcaaaatctccgaccatatgaagaagtgccacagcctgcaggaagtg
ttcgattacatccattattgggatacagaacggaagaatttacctgtagccacggatggc
attgttttgaaagtaaatagcctgaaacaacagaaaaacctcggtttcaccgcaaaatct
cctcgttgggccatcgcatacaagttccaggcagagcgtgcattgacccgcttaaacaag
gtgacttaccaggtgggaagaaccggagcagtaacccctgttgccaatctggatccggta
caattatcgggtacaatcgtaaaacgtgcctctctgcataatgcagatatcattgaaggg
ctcgacttgcatgtcggcgatatggtttatgtagaaaaaggcggtgaaatcatacccaaa
attaccggagtagataaagatgcccggagtatgatggtaggtgaaaaagtgaagttcatc
actcattgccctgaatgtggcagcaaattaatccgttacgagggagaagctgcgcattat
tgccccaacgaaacggcttgtccgcctcagataaaaggaaagatcgagcatttcatcagc
cggaaggctatgaacattgacggattaggcccggaaactgtggatatgttctaccgatta
ggactcattaaggatacgacagatctgtacaagctgactgtagacgatatcaagaatctg
gaccgtatgggagataagtcggcggaaaatatcgtcaagggtattgcccaaagtagggaa
gtgccttttgagcgagcattgttcgccctaggtatccgctttgtcggtgaaactgtagca
aagaaaatagctaagtccttcactgacatagaagaactggaaaatgcagatcttgaaaga
ttgataaatatcgatgagatcggtgagaaaatagcgcaaagtatcatttcctacttcgct
aatcctctgaatagagaattaatagagcgactgaaaattgccggattacagtttagccga
aaggaagaagacctgagcggctataccgataaacttgtcggacagtctattgtaatcagc
ggcgtgtttacccatcactccagagacgaatataaagatttgatagagaagaatggagga
aaaaatgtaggtagcatttctgccaagaccagttttatcctggcaggagaaaatatggga
cccgctaaattagaaaaagcgcaaaagttgggtgtacagataatgagcgaagatgagttt
ttagcgctcatttcgtaa
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integrated database retrieval system
