Bos indicus (zebu cattle): 109571124
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Entry
109571124 CDS
T04792
Symbol
KDM2B
Name
(RefSeq) lysine-specific demethylase 2B isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
biu
Bos indicus (zebu cattle)
Pathway
biu03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
biu00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
109571124 (KDM2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
biu03000
]
109571124 (KDM2B)
04121 Ubiquitin system [BR:
biu04121
]
109571124 (KDM2B)
03036 Chromosome and associated proteins [BR:
biu03036
]
109571124 (KDM2B)
Enzymes [BR:
biu01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
109571124 (KDM2B)
Transcription factors [BR:
biu03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
109571124 (KDM2B)
Ubiquitin system [BR:
biu04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
109571124 (KDM2B)
Chromosome and associated proteins [BR:
biu03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
109571124 (KDM2B)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
109571124 (KDM2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
F-box
Cupin_8
JmjC
Motif
Other DBs
NCBI-GeneID:
109571124
NCBI-ProteinID:
XP_019832914
UniProt:
A0A6P5D647
LinkDB
All DBs
Position
17:56385561..56504563
Genome browser
AA seq
1340 aa
AA seq
DB search
MEAEKDSGRRLRPIDRQRYDENEDLSDVEEIVSARGFSLEEKLRSQLYQGDFVHAMEGKD
FNYEYVQREALRVPLVFREKDGLGIKMPDPDFTVRDVKLLVGSRRLVDVMDVNTQKGTEM
SMSQFVRYYETPEAQRDKLYNVISLEFSHTKLEHLVKRPTVVDLVDWVDNMWPQHLKEKQ
TEATNAIAEMKYPKVKKYCLMSVKGCFTDFHIDFGGTSVWYHVFRGGKIFWLIPPTLHNL
ALYEEWVLSGKQSDIFLGDRVERCQRIELKQGYTFFIPSGWIHAVYTPVDSLVFGGNILH
SFNVPMQLRIYEIEDRTRVQPKFRYPFYYEMCWYVLERYVYCMTQRSYLTQEYQRESMLI
DAPRKPSIDGFSSDSWLEMEEESCEQQPQEEKEEEEEEEEEEEGADKTPRASTDGPASPT
STPSEDQEAPGKKPKAPAMRFLKRTLSNESEDSVKSATMPTDYPKTPTGSPATEVSAKWT
HLTEFELKGLKALVEKLESLPENKKCVPEGIEDPQALLEGVKNVLKEHAEDDPSLAITGV
PVVTWPKKTPKNRAVGRPKGKLGPASAVKLAANRTTAGARRRRTRCRKCEACLRTECGEC
HFCKDMKKFGGPGRMKQSCIMRQCIAGTVPPAPGREWRSPCSPGTAGSAGGSRPPAQPVL
PHTAVCLVCGEAGKEDTVEEEEGKFNLMLMECSICNEIIHPGCLKIKESEGVVNDELPNC
WECPKCNHAGKTGKQKRGPGFKYASNLPGSLLKEQKMNRDNKEGQEPAKRRSECEEAPRR
RSDEHPKKVPPDGILRRKSDDVHLRRKRKYEKPQELSGRKRASTLQTSPGSSSHLSPRPP
LGSSLSPWWRSSLTYFQQQLKPGKEDKLFRKKRRSWKNAEDRITLANKPLRRFKQEPEDD
LPEAPPKTRESDHSRSSSPTAGPSTEGAEGPEEKKKVKMRRKRRLPNKELSKELSKELNQ
EIQKTESSLAQENHQPIKSEPESENEEPKRPLGLCERPHRFSKGLNGTPRELRHQLGPGL
RXXXRVISRPPPSVSPPKCIQMERHVIRPPPISPPPDSLPLDDGAAHVMHREVWMAVFSY
LSHQDLCVCMRVCKTWNRWCCDKRLWTRIDLNHCKSITPLMLSGIIRRQPVSLDLSWTNI
SKKQLSWLINRLPGLRDLVLSGCSWIAVSALCSSSCPLLRTLDVQWVEGLKDAQMRDLLS
PPTDNRPGQMDNRSKLRNIVELRLAGLDITDASLRLIIRHMPLLSKLHLSYCNHVTDQSI
NLLTAVGTTTRDSLTEINLSDCNKVTDQCLSFFKRCGNICHIDLRYCKQVTKEGCEQFIA
EMSVSVQFGQVEEKLLQKLS
NT seq
4023 nt
NT seq
+upstream
nt +downstream
nt
atggaggcagagaaagactctggaagaagattgcgcccgattgaccgccaaagatacgac
gagaacgaggacttgtcggacgtggaggagatcgtcagcgcccgcggcttcagcctggag
gaaaagctgcgcagccagctgtaccagggggatttcgtgcacgccatggagggcaaagat
ttcaactatgagtatgtgcagagagaagctctcagagttcccctggtatttcgagaaaag
gatggcctgggaattaagatgcctgaccctgatttcacagtccgagatgtcaaactccta
gtgggtagccgacggctggtggacgtgatggacgtgaacacccagaaaggcacggagatg
agcatgtcccagttcgtacggtactacgagacgcccgaggcccagcgggacaagctgtac
aacgtcatcagccttgagttcagccacaccaagctggagcacttggtcaagcgtcccacc
gtggtagacctggtggactgggtggacaacatgtggcctcagcacttgaaggagaagcag
acggaagccacgaatgccattgcagagatgaagtacccgaaagtgaagaagtactgtctg
atgagtgtgaagggttgtttcactgacttccacatcgactttggaggtacttccgtttgg
taccatgttttccggggtgggaagattttttggctgattcctccaaccttgcacaatttg
gcactgtatgaggagtgggtgctgtcaggcaaacagagcgacatcttcctgggagaccgc
gtggagcgatgccaaagaattgagctgaaacagggttacacgtttttcatcccttccggc
tggatccatgcagtctacactcccgtagactctctggtgttcggcgggaacatcctgcac
agcttcaacgtgcccatgcagctgcggatctacgagatcgaggacagaacgcgggtgcag
cccaaattccgttaccccttctactatgagatgtgctggtatgtcttggagagatacgtg
tactgtatgacccagcggtcctacctcactcaggaataccagagagaatcaatgcttatt
gatgccccaagaaagcccagcatagacggcttctcatctgattcctggctggagatggag
gaggagtcctgtgagcagcagccccaggaggagaaggaggaagaggaggaagaagaggaa
gaggaggagggtgcagataagacccccagagcatccaccgatggccctgcctcacccacg
agcaccccgtccgaggaccaggaggcccccgggaagaagcccaaagcccctgccatgcgg
ttcctcaaaaggactctgtcaaacgagtcagaggacagcgtgaagtctgccacgatgccc
actgactaccccaagacgcccaccggctctcctgccactgaggtctctgccaaatggacc
cacctcaccgagtttgaactgaagggcctgaaagctctggtggagaaacttgaatccctc
ccggagaacaagaagtgtgtccctgagggcatcgaggacccccaggccctcctggagggt
gtgaagaatgtcctgaaggagcacgcggaggacgaccccagtctggccatcactggggtc
cccgtagtcacttggccaaagaagactccaaagaaccgggcggtaggtcggcccaagggg
aagctgggcccggcctccgcggtgaagttggccgccaaccggaccacggcgggagctcgc
cggcgccggacgcgatgccgcaagtgcgaggcctgcctgcggacggagtgcggcgagtgc
cacttctgcaaggacatgaagaagttcgggggccccgggcggatgaagcagagctgcatc
atgaggcagtgcatcgcgggcactgtgcctccagccccagggagggagtggcgatctccc
tgctccccggggacagcaggctcagcgggaggatcaaggcctccggcccagccagtgctg
cctcacaccgctgtgtgcctggtgtgtggcgaggcaggaaaagaggacacagtggaagag
gaagaaggcaaatttaacctcatgctcatggaatgctccatctgcaatgaaatcatccac
cctggatgccttaagattaaggagtcagagggcgtggtcaacgatgagcttccaaactgc
tgggagtgtcccaagtgtaaccacgccggcaagaccgggaaacaaaagcgtggccctggc
tttaagtacgcctccaacctgcctggctccctgctcaaggagcagaagatgaaccgggac
aacaaggaagggcaggagcctgccaagcggaggagtgagtgtgaggaggcgccccggcgc
aggtccgacgagcaccccaagaaggtgccccccgacggcatcctgcgccgaaagtcggac
gacgtgcacctgaggcggaagcggaaatacgagaagccccaggagctgagtggacgcaag
cgagcctcgacgcttcaaacgtcccccggttcctcctctcacctctcgccgaggccccct
ctaggcagcagcctcagcccctggtggagatccagtctcacttacttccagcagcagcta
aaacctggcaaagaagataagcttttcaggaaaaagcgacggtcctggaagaacgccgag
gaccggataactctagccaacaagcctctccggcggttcaagcaggaaccagaggacgac
ctacccgaggcgccccccaagaccagggagagcgaccactcgcgctccagctcccctact
gccgggccaagcacagagggcgcggaggggcccgaggagaagaagaaggtgaagatgcgc
cggaagcggcggctccccaacaaggagctgagcaaggagctgagcaaggagctgaaccag
gagatccagaagacggagagcagcctggcccaggagaatcaccagcccatcaagtcggag
cctgagagcgagaacgaggagcccaagcggcccctgggcctctgcgagcgcccccaccgc
ttcagcaaggggctcaacggcaccccccgggagctgcggcaccagctggggcccggcctg
cggannnnnnnccgagtcatctcccggccccctccctccgtgtccccgcccaagtgcatc
cagatggagcgacatgtgatccggccgccccccatcagccccccgcccgactcgctgccc
ttggatgacggggcagcccatgtcatgcacagggaggtgtggatggccgtcttcagctac
ctcagccaccaagacttgtgtgtctgcatgcgggtctgcaagacctggaaccgctggtgc
tgcgataagcggttatggacccgcatcgatttgaaccactgcaagtccatcacgcccctg
atgctaagcggcatcatccggcgacagcctgtctccctagacctcagctggaccaatatc
tccaagaaacagctgagctggctcatcaaccggttgcctgggctccgagacttggtgctg
tccggctgctcgtggatcgcagtctctgccctctgtagctccagctgtccactgctccgg
accctggatgtccagtgggtagaagggctgaaggacgcccagatgcgggacctcctgtcc
ccgcctacagacaacaggccaggtcagatggacaatcggagtaagctccggaacattgtg
gagctgcgtctggccggcctggacatcacggacgcctccctgcggcttatcatccgccac
atgcccctgctctccaagctccacctcagttactgtaaccacgtcactgaccagtccatc
aacctgctcactgctgtgggcaccaccacccgggactccttaaccgaaatcaacctgtca
gactgcaataaggtgactgaccagtgcctgtccttcttcaaacgctgtgggaatatctgt
cacattgacctgaggtactgcaagcaagttaccaaggaaggctgcgagcagttcatagcc
gaaatgtctgttagtgtccagttcgggcaagtggaagaaaaactcctgcaaaaactgagt
tag
DBGET
integrated database retrieval system
