Brenneria izadpanahii: HC231_23190
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Entry
HC231_23190 CDS
T07407
Symbol
ligB
Name
(GenBank) NAD-dependent DNA ligase LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
biz
Brenneria izadpanahii
Pathway
biz03030
DNA replication
biz03410
Base excision repair
biz03420
Nucleotide excision repair
biz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
biz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HC231_23190 (ligB)
03410 Base excision repair
HC231_23190 (ligB)
03420 Nucleotide excision repair
HC231_23190 (ligB)
03430 Mismatch repair
HC231_23190 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
biz03032
]
HC231_23190 (ligB)
03400 DNA repair and recombination proteins [BR:
biz03400
]
HC231_23190 (ligB)
Enzymes [BR:
biz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HC231_23190 (ligB)
DNA replication proteins [BR:
biz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HC231_23190 (ligB)
DNA repair and recombination proteins [BR:
biz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HC231_23190 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HC231_23190 (ligB)
MMR (mismatch excision repair)
DNA ligase
HC231_23190 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HC231_23190 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_5
RNA_ligase
HHH_8
HHH
Motif
Other DBs
NCBI-ProteinID:
QTF10501
LinkDB
All DBs
Position
complement(5187253..5188947)
Genome browser
AA seq
564 aa
AA seq
DB search
MNFWFRRFVVMVLAGWVGWPCIAIASCPEWSNDRALKEMAMLRQQLAQWDDAYYKAGVSL
VEDEVYDQLRSRLNYWRRCFQPDGEDFAVRLPNGGKQRHPVAHTGLKKLSERERLSQWIT
RHKDLWIQPKIDGVAVTLAYRRGRLVSATSRGNGIRGENWTEKALAIADIPKRLMNAPPS
VVLQGELFLKVDDHRQERQGGINARAAVAGEMRRHAASSVLPRIGIFIWAWPDGPAALPE
RLDALRAMGFALTADYTHPISSLGDAERWRAYWYRHPLPFVTDGVVIRQDKEPAGRYWRD
TPADWAIAWKYPLVQRVAEVKGVDFSIGRTGKVNVVLNLNPLRLDDKFVHRVNVGSLSRW
RQWDVLPGDQVGISLAGQGIPRLDKVVWRTAERSPVTPPNADDFHNLSCFQYSIPCQRQM
LSRLTWLSGEHGLNLKGISEGVWRRLIQHGALSDVLSWLTLTRAQIGDVWGVGNKQADNI
YESLQQARRQPLARWLLALGLPLPRSASGALDNMNWLQLQQRTLSQWRQFPGVGAKLAEE
IMAFLHHPVVVELIARISREGIKT
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atgaatttctggttcagacggtttgtcgtcatggtattggcgggatgggtcggttggcca
tgcattgcgatcgcctcctgcccggagtggtcgaacgaccgggccctaaaagagatggcg
atgctgcgccagcagttggcgcagtgggacgacgcctattataaagcgggcgtcagcctg
gtggaggacgaggtttatgatcagctccggagccggttgaactattggcgtcgctgtttt
caaccggatggggaggatttcgccgtccgcttgccgaacggcggtaaacaacgtcacccc
gtggcgcatactggtttgaaaaagctgtctgaacgcgaacggctgtcgcaatggataacg
cggcataaggatttatggatccagcccaaaattgacggcgtagcagtaacgctggcgtat
cggcggggaaggctggtatcggcaacgagccggggcaacggcatacggggcgaaaactgg
acggagaaggctctcgctattgcggatattcccaaacggttgatgaatgcgcccccaagc
gtggtgttgcagggggagctatttcttaaggtggacgaccatcggcaggagcggcaaggt
ggcatcaatgcccgcgcggcggtggcgggggaaatgcgtcgccatgcggcctcatctgtt
ttgccgcgcatcggaatctttatctgggcatggcccgatggccccgccgcattgcctgag
cgtcttgatgcgctgcgggcgatgggattcgctttgacggccgactatacgcatcccatt
tcatcgctgggagacgccgagcgctggcgggcgtactggtatcgccatcccttgcctttc
gttaccgatggcgtggtgatccgtcaggataaggagcctgcgggacgctactggcgagat
acgcccgccgattgggctatcgcctggaaatatccgttggttcagcgggtggcggaagtg
aagggggtagatttttctattggtcgcaccggtaaggtaaacgttgtcctgaatctcaat
ccattgcggttggatgataagtttgttcaccgggttaatgtcggatcgctatcgcgctgg
aggcaatgggacgttctgcccggcgatcaggtcggcatcagcctggcggggcaggggatt
ccgcggttggataaggtcgtctggcggacggctgagcgttcaccggtcacgcctccgaat
gcggatgatttccataaccttagctgttttcagtacagcattccctgccagcggcaaatg
ctctcgcgtttaacctggctaagcggggagcatggactgaatcttaaaggcatcagtgaa
ggcgtgtggcggcgcctgatacagcacggcgcgctgagtgacgttttatcatggttgact
ctgaccagagcgcagataggcgatgtctggggcgtgggcaacaaacaggccgataatatt
tatgagagtttgcaacaggctcgtcggcaacctctggcgcgttggttattggcgctcggg
cttcccttaccccgttcagccagcggcgcgctggataatatgaactggttgcagctgcaa
caacgtacattgtcgcagtggcgacagtttccgggggttggcgctaaattggctgaagag
attatggcttttttgcaccatccggtcgttgttgaacttatagccagaataagccgtgaa
gggatcaaaacgtag
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