Bradyrhizobium diazoefficiens USDA 110: bll6591
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Entry
bll6591 CDS
T00109
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bja
Bradyrhizobium diazoefficiens USDA 110
Pathway
bja03030
DNA replication
bja03410
Base excision repair
bja03420
Nucleotide excision repair
bja03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bja00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
bll6591 (ligA)
03410 Base excision repair
bll6591 (ligA)
03420 Nucleotide excision repair
bll6591 (ligA)
03430 Mismatch repair
bll6591 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bja03032
]
bll6591 (ligA)
03400 DNA repair and recombination proteins [BR:
bja03400
]
bll6591 (ligA)
Enzymes [BR:
bja01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
bll6591 (ligA)
DNA replication proteins [BR:
bja03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
bll6591 (ligA)
DNA repair and recombination proteins [BR:
bja03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
bll6591 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
bll6591 (ligA)
MMR (mismatch excision repair)
DNA ligase
bll6591 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
bll6591 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
PTCB-BRCT
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
BAC51856
UniProt:
Q89FV8
LinkDB
All DBs
Position
complement(7258760..7260910)
Genome browser
AA seq
716 aa
AA seq
DB search
MMARAAKSKPLRDVAELTKAQAKVELMRLALELEGHDKRYYQDDAPTVTDAEYDALRQRF
NAIEKRFPEFVSAESPSQKVGAAPSGRFRKVRHAVPMLSLDNAFAEEDVRDFVGRIVRFL
KLDDDKIDFSAEPKIDGLSMSLRYEGGELVTAATRGDGAEGEDVTANIRTLEDVPQKLKG
RNVPDICEVRGEVYMTKKAFLALNERQKAAGDTIFANPRNSAAGSLRQKDPTITASRPLG
FFAYAWGEMSAMPEETQTGMIHWFERCGFKTNPLTRLCHSVEELIAFHQRIEEERAELDY
DIDGVVYKVDRIDWQERLGFVSRTPRWGIAHKFPAEQAMTVLRDIEIQVGRTGSFTPVGK
LEPVGVGGVIVQNVTLHNEDYIKGIGNKGEVLREGRDIRIGDTVVIQRAGDVIPQVVDVV
LDKRPKTAKEFHFPKTCPCPLHTDVTREETAAGEEGSRARCTGEFACPYQKIEHLKLFVS
RRAFDIDGLGEKQLQYFFDEGFVKEPADIFTLEKRNAKLKLEEIEGYGATSVRNLFAAIE
SRRRIALERFVYALGMRHVGETTALALARGYGSWEAFHDACLKVAKGDEEAMADMDALDQ
IGDTVIKSIADYFGESHNRGIVERLTKEVEIVDAEKPKSNSAVAGKTVVFTGSLEKMTRD
EAKATAERLGAKVSGSVSKKTDLVVAGPGAGSKLAEANKHGVKVLTEDEWLKLIGE
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atgatggcaagagcagcaaaatccaaaccgctccgtgacgtcgccgagctcaccaaggcg
caggccaaggtcgagctcatgcggctcgcgctggagctcgaagggcatgacaagcgctac
tatcaggatgacgcgcccaccgtcaccgacgccgaatacgacgcgttgcgccagcgcttc
aatgcgatcgaaaaacgctttccggaattcgtcagcgcggaatcgccctcgcagaaggtc
ggcgcggcgccgtcaggccgcttcaggaaggtccggcatgccgtccccatgctgtcgctc
gacaacgcctttgccgaagaggacgtgcgcgacttcgtcggccgcatcgtgcgcttcctg
aagctcgacgacgacaagatcgacttctccgccgagccgaagatcgacggtctctcgatg
tcactgcgctatgagggcggcgagctcgtcactgccgcgacgcgcggtgacggtgcggag
ggcgaggacgtcaccgccaatatccgcaccctcgaagacgtgccgcagaagctgaagggc
cgcaatgtccccgacatctgcgaggtgcgcggcgaggtctacatgaccaagaaggcgttc
ctcgcgctcaacgagcggcagaaggccgccggcgatacgatcttcgccaatccgcgcaac
tcggcggccggctcgctccgccagaaggatccgaccatcaccgcctcgcgccccctcggc
ttcttcgcctatgcctggggcgagatgagcgcgatgccggaggagacgcagaccggcatg
atccactggttcgagcgctgcggcttcaagaccaatccgctgaccaggctgtgccactcg
gtcgaggagctgatcgcgttccaccagaggatcgaggaagagcgcgccgagctcgactac
gacatcgacggcgtcgtctacaaggtcgaccgcatcgactggcaggaacggctcggcttc
gtctcgcgcacgccgcgctggggcatcgcgcacaaattccccgccgagcaggccatgacg
gtcctgcgcgacatcgagatacaggtcggccgtaccggctcgttcacgccggtcggcaag
ctcgagccggtcggcgtcggcggcgtgatcgtgcagaacgtcacgttgcacaatgaggac
tacatcaagggcatcggcaacaagggcgaggtgctgcgcgaggggcgcgacatcaggatc
ggcgacaccgtcgtgatccagcgcgccggcgacgtcatcccgcaggtggtcgacgtcgtc
ctcgacaagcggccgaagactgccaaggaattccacttccccaagacgtgcccgtgcccg
ctgcacaccgacgtcacgcgcgaggagacggccgcgggcgaagagggctcgcgcgcccgc
tgcaccggtgagttcgcctgcccctatcagaagatcgagcacctcaagctgttcgtgtcg
cggcgggccttcgacatcgacggcctcggcgagaagcagctccagtatttcttcgacgaa
ggttttgtgaaagagcccgccgacatcttcacgctggagaagcgcaacgcgaaactcaag
ctcgaggagatcgagggttacggcgccacctccgtgcgcaacctcttcgccgccatcgag
agccggcgcagaatcgcgctcgagcgcttcgtctatgcgctcggcatgcgccatgtcggc
gagaccaccgcgctggcgctggcgcgcggctacggctcctgggaggcgttccacgacgcc
tgcctcaaggtcgccaagggcgacgaggaggcgatggcggacatggatgcgctcgaccag
atcggcgacaccgtgatcaagagcatcgccgattatttcggcgagagccacaaccgcggc
atcgtcgagcgcctgaccaaggaggtcgagatcgtcgacgccgagaagccgaagagcaac
tcggccgtcgccggcaagaccgtggtgttcacgggctcgctggagaagatgacgcgggat
gaagccaaggccaccgctgagcggctcggcgccaaggtgtcgggctcggtgtcgaagaag
accgatctcgtcgtcgccggcccgggcgccggctcgaagctcgccgaggccaacaagcac
ggcgtcaaggtgctgaccgaagacgagtggctgaagctgatcggggagtga
DBGET
integrated database retrieval system
