Borreliella japonica: QIA21_03350
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Entry
QIA21_03350 CDS
T09309
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bjo
Borreliella japonica
Pathway
bjo03030
DNA replication
bjo03410
Base excision repair
bjo03420
Nucleotide excision repair
bjo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bjo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QIA21_03350 (ligA)
03410 Base excision repair
QIA21_03350 (ligA)
03420 Nucleotide excision repair
QIA21_03350 (ligA)
03430 Mismatch repair
QIA21_03350 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bjo03032
]
QIA21_03350 (ligA)
03400 DNA repair and recombination proteins [BR:
bjo03400
]
QIA21_03350 (ligA)
Enzymes [BR:
bjo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
QIA21_03350 (ligA)
DNA replication proteins [BR:
bjo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QIA21_03350 (ligA)
DNA repair and recombination proteins [BR:
bjo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
QIA21_03350 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QIA21_03350 (ligA)
MMR (mismatch excision repair)
DNA ligase
QIA21_03350 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QIA21_03350 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_5
HHH_2
PTCB-BRCT
PTSIIA_gutA
HHH
GerPB
CEBP_ZZ
DNA_ligase_ZBD
Motif
Other DBs
NCBI-ProteinID:
WKC88209
LinkDB
All DBs
Position
566653..568635
Genome browser
AA seq
660 aa
AA seq
DB search
MSSKIQQEIEDLKKLIRKWDKEYYVDSLPSVEDFVYDKHILRLKELENKYPEYKTLDSPT
LKFGSDLLNDFKEVEHFTPILSLDKVYDLDLLKSWIEKIDFNNSFNISVEPKIDGCSIVL
YYKDGILEKALTRGNGKFGNDVTKNIKTIRHIPLLLDEKVDLVLRGEVYITKENFFKINE
CLEKPYTNSRNLASGILRRVNSKEVANFPLNIFIYDFLNAGLEFKTNNLAIARLEKLGFK
VYPLIRFFDQKSSIREVLNYIKDIIKNRNSFEYEIDGVVIKVSDFVLREELGYTSHHPKW
AIAYKFEALSGFSKVNSIVVQVGRSGKITPVANIDKIFVSGAFITNATLHNQDYIMSIGL
NVGDVVKVSRRGDVIPAVEMVINKFSKGFFKVPDNCPACKMVVEKKGAHFFCANNNCPSV
VVERIKYFCSKNCMDIEGFSDKTISFLFEKKFISSEIDLYTFDFYKLLEFKGFKDKKINN
LINSIEASKKKPFSKLLLSMGIKELGENTIRLLFFNNLNSFSKLFSLCQDRDFAFSTLLK
IKGIGEKIALSIIEAFNDSIMLNKFKFFEDLEFKMEECIVIDDENKLLVGKKFCITGTFN
GYSRPIVIDKLENKGAIFKTCVTKGLDFLVVGEKAGSKLKKALNLNIKIMSFEDINSYLD
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atgagcagtaaaatacagcaagaaattgaagacttgaagaaattgatcagaaagtgggat
aaagagtactatgtcgattctttgcctagtgttgaagattttgtgtatgacaagcatatt
ttaaggcttaaagaactagaaaataagtaccccgaatataagaccttagattctcccact
cttaaatttggcagcgatcttttgaatgattttaaagaggttgagcattttactcctata
ttaagtcttgacaaggtttatgatcttgatttactaaaatcatggatagaaaagattgat
tttaacaattcttttaatatttctgttgagccaaagattgatggttgttctattgttctt
tattataaagatggtattcttgaaaaagctcttactaggggtaatggaaaatttggtaat
gacgttactaaaaacattaaaaccattaggcatattcctttattgcttgatgaaaaggtt
gatttggtattaaggggtgaggtttacattactaaagaaaatttttttaaaataaatgaa
tgcttggaaaagccttatactaattctagaaatttagcttcagggatacttagaagggtt
aatagcaaagaggttgctaattttcccttaaatattttcatctatgattttttgaatgct
ggattagagtttaaaactaataatttggctattgcaagacttgagaaattgggctttaag
gtttatcctttgattaggttttttgatcaaaaaagttcaattagagaagttttaaattac
ataaaagatataataaaaaatagaaattcttttgagtatgaaatagatggagtcgttatt
aaggttagtgattttgttttaagggaagaattagggtacacttcacatcatcctaaatgg
gcgatagcttacaaatttgaagcgctttcaggttttagtaaggtaaatagtattgttgtc
caagttggtcgtagtggtaaaattactccggttgccaatattgataaaatttttgtttca
ggggcttttattactaatgcaacattgcataatcaggattatataatgtctattggtttg
aatgttggtgatgtcgttaaggtttcaagaaggggagatgtaattcctgctgttgaaatg
gtgataaataaattttcaaaaggattttttaaggttcctgataattgtccagcttgcaaa
atggttgtagaaaaaaagggggcacattttttttgtgcaaataataattgtccttcagtg
gtagttgagagaataaaatatttttgtagtaaaaattgcatggatattgaagggttttct
gataagaccatttcttttcttttcgaaaaaaaatttatttcttcagaaattgacctttat
acatttgatttttataaacttcttgaatttaaagggtttaaagataaaaagattaataat
ttaataaattcaattgaagccagcaagaaaaaaccatttagtaaattacttcttagtatg
gggattaaagagttaggagaaaatacaataagactattatttttcaataatttaaattca
ttttcaaagctttttagtctttgtcaagatagggattttgctttttcaacattgttgaag
attaaaggcataggagaaaaaattgctttaagcattattgaagcttttaatgattcaata
atgcttaataagtttaaattttttgaagatttagaatttaaaatggaagagtgtattgtg
attgatgatgaaaataagttattggttggtaaaaagttttgcattactggaacttttaat
ggttattctaggcctattgttattgacaagttggaaaataaaggagcaatttttaaaact
tgtgtgactaaaggtttggatttccttgttgtaggagaaaaagctggatcaaagcttaaa
aaagctttgaatttgaatataaaaattatgtcttttgaagatatcaatagttacttagat
taa
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