Bradyrhizobium japonicum E109: RN69_13850
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Entry
RN69_13850 CDS
T03509
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bjp
Bradyrhizobium japonicum E109
Pathway
bjp03030
DNA replication
bjp03410
Base excision repair
bjp03420
Nucleotide excision repair
bjp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bjp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RN69_13850
03410 Base excision repair
RN69_13850
03420 Nucleotide excision repair
RN69_13850
03430 Mismatch repair
RN69_13850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bjp03032
]
RN69_13850
03400 DNA repair and recombination proteins [BR:
bjp03400
]
RN69_13850
Enzymes [BR:
bjp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RN69_13850
DNA replication proteins [BR:
bjp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RN69_13850
DNA repair and recombination proteins [BR:
bjp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RN69_13850
NER (nucleotide excision repair)
GGR (global genome repair) factors
RN69_13850
MMR (mismatch excision repair)
DNA ligase
RN69_13850
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RN69_13850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
PTCB-BRCT
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
AJA61345
LinkDB
All DBs
Position
2944974..2947127
Genome browser
AA seq
717 aa
AA seq
DB search
MARAAKSNARPLRDVADLTKAQAKVEHMRLALELEEHDRRYYQEDAPTVTDAEYDALRQR
FNAIEKRFPDFVSAESPSQKVGAAPSGRFKKVRHSVPMLSLDNAFAEEDVRDFVGRIVRF
LKLDDDKVDFSAEPKIDGLSMSLRYEGGELVTAATRGDGAEGEDVTANIRTLEDVPQKLK
GRNIPDICEVRGEVYMTKKAFLALNERQKAEGSTIFANPRNSAAGSLRQKDPTITASRPL
GFFAYAWGEMSAMPEGTQSGMIGWFESCGFKTNPLTRLCHSVEELLAFHHSIEEQRAKLD
YDIDGVVYKVDRIDWQERLGFVSRTPRWGIAHKFPAERAVTVLRDIEIQVGRTGSFTPVG
KLEPVGVGGVIVQNVTLHNEDYIKGIGNKGEVLREGRDIRIGDTVVIQRAGDVIPQVVDV
VLDKRPKTAKEFHFPTKCPCPLHTDVTREETAAGEEGSRARCTGEFACPYQKIEHLKLFV
SRRAFDIDGLGEKQLQYFFDEGWVKEPADIFTLEKRNAKLKLEEIEGYGATSVRNLFGAI
ESRRRIALERFVYALGMRHVGETTALALARGYGSWDAFHDACLKVAKGDEEAMAEMDALD
QIGDTVIKSIADYFGESHNRGIVERLTKEVEIIDAEKPKSNSAVAGKTVVFTGSLEKMTR
DEAKATAERLGAKVSGSVSKKTDLVVAGPGAGSKLAEANKHGVKVLTEDEWLTLIGE
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atggcaagagcagcaaaatccaacgcaaggccgcttcgcgacgtcgccgacctcaccaag
gcgcaggccaaggtcgagcacatgcggctcgcgctcgaactcgaagagcacgacaggcgc
tactatcaagaggacgcgcctaccgtgaccgacgccgaatacgacgcgttgcgccagcgc
ttcaacgcgatcgaaaagcggtttccggatttcgtcagcgcggagtcgccgtcccagaaa
gtcggcgcggccccgtcggggcgcttcaagaaggttcggcattccgttccgatgctgtcg
ctcgacaacgcgtttgccgaagaggacgtccgcgacttcgtcggccgcatcgtgcgcttc
ctgaagctcgacgacgacaaggtcgatttctcggccgagccgaagatcgacggcctttcg
atgtcgctgcgctacgagggcggcgagctcgtcaccgcggcgacccgcggtgatggcgct
gaaggcgaggacgtcaccgccaacatccgtacgctcgaagacgtgccgcagaagctgaaa
ggccgcaacatcccggatatctgcgaggtgcgcggcgaggtctacatgaccaagaaagcg
ttcctcgcgctcaacgagcggcagaaggcggaaggcagcaccatcttcgccaatccgcgc
aattcggctgcgggctcgctccggcagaaggacccgaccatcaccgcctcgcgccccctg
ggcttcttcgcctatgcctggggcgagatgagcgcgatgccggagggtacgcagagcggc
atgatcggctggttcgagagctgcggcttcaagaccaatccgttgaccaggctctgtcat
tccgtcgaggagctgctcgcgttccatcattcgatcgaggagcagcgcgcaaaactcgat
tacgacatcgacggcgtcgtctacaaggtcgaccgcatcgactggcaggaacggctcggc
ttcgtctcacgcacgccgcgctggggcatcgcgcacaaattcccggccgagcgcgccgtg
acggtgctgcgcgacatcgagatccaggtcggccgcaccggctcgttcacgccggtcggc
aagctcgaaccggtcggcgtcggcggcgtgatcgtgcagaacgtcaccctgcacaacgag
gactacatcaagggcatcggcaacaagggtgaggtgctgcgcgaggggcgcgacatcagg
atcggcgacaccgtcgtgatccagcgtgccggcgacgtcatcccgcaggtggtcgacgtc
gtcctcgacaagcggccgaagaccgccaaggaattccatttcccgacgaagtgcccgtgc
ccgctgcacaccgacgtcacgcgcgaggagacggcggccggcgaagagggctcgcgcgcc
cgctgcaccggcgagttcgcctgtccctatcagaagatcgagcacctcaaactgttcgtg
tcgcggcgcgctttcgacatcgacggtcttggcgagaagcagctccagtatttcttcgac
gagggttgggtgaaggagcctgccgatatcttcacgctggagaagcgcaatgcgaagctg
aaactcgaggagatcgagggctacggcgcaacgtcggtgcgcaacctgttcggcgccatc
gagagccggcgcagaatcgcgctggagcgcttcgtctatgcgctcgggatgcgtcatgtc
ggcgagaccacggcgctggcgctcgcacgcggctatggctcgtgggacgctttccacgac
gcctgcctcaaggttgccaagggcgacgaggaggcgatggccgagatggacgcgctggac
cagatcggcgacaccgtgatcaagagcatcgccgactatttcggcgagagccacaatcgc
ggcattgtcgagcggctgaccaaggaagtcgagatcatcgacgccgagaagccgaagagc
aattccgccgtcgccggcaagacggtggtgttcacgggatcgctggagaagatgacgcgc
gacgaggccaaggcgaccgcggagcgtctgggggcgaaggtgtcgggttcggtgtcgaag
aagaccgacctcgtcgtcgccggccccggcgcgggctccaagctcgcggaagccaacaag
cacggcgtcaaggtgttgaccgaggacgagtggctgacgctgatcggggagtga
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