Bubalus kerabau (carabao): 129648896
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Entry
129648896 CDS
T11435
Symbol
EFTUD2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
bke Bubalus kerabau (carabao)
Pathway
bke03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bke00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129648896 (EFTUD2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bke03041
]
129648896 (EFTUD2)
Spliceosome [BR:
bke03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
129648896 (EFTUD2)
Complex C
U5 SnRNP specific factors
129648896 (EFTUD2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
Motif
Other DBs
NCBI-GeneID:
129648896
NCBI-ProteinID:
XP_055431647
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All DBs
Position
4:19602003..19638732
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AA seq
972 aa
AA seq
DB search
MDTDLYDEFGNYIGPELDSDEDDDELGRETKDLDEVDEDEDDDDVGDHDEDHPGMEVVLH
EDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFTLMEQTLPVTVYEMDFLA
DLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVG
IKSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTE
RLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLIL
SPLLGNVCFSSSQYSICFTLGSFAKIYADTFGDINYQEFAKRLWGDIYFNPKTRKFTKKA
PTSSSQRSFVEFILEPLYKILAQVVGDVDTSLPRTLDELGIHLTKEELKLNIRPLLRLVC
KKFFGEFTGFVDMCVQHIPSPKVGAKPKIEHTYTGGMDSDLGEAMSDCDPDGPLMCHTTK
MYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYHIE
VNRVPAGNWVLIEGVDQPIVKTATITEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSEL
PKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVV
TFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQT
KYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLC
DELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPA
DCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSV
FHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLE
LAKQDVVLNYPM
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atggatactgacttgtatgatgagtttgggaattacatcggaccagagcttgattctgat
gaagatgatgatgaattgggcagagagaccaaagatcttgatgaggtcgatgaggacgag
gacgacgacgatgtgggcgatcacgacgaagaccaccctgggatggaggtggtgctgcac
gaggacaagaagtactaccccaccgcagaggaggtgtatggccccgaagtggagaccata
gttcaggaggaggacacccagcctctcacagaacccattattaagccagtgaaaaccaag
aaattcactctgatggagcagacgttacctgtcacggtgtacgaaatggatttcttggca
gatctgatggataactcggagctcatcagaaatgtgactctctgtggccatctgcaccac
ggcaagacatgttttgtagattgtttaatagagcagactcacccggaaatcagaaagcgc
tatgaccaagatctgtgctacactgacatcctcttcacagaacaagagaggggtgttggc
atcaaaagtactcctgtgacagtggtcttgccagataccaaggggaaatcctacctcttc
aacatcatggacactccaggacacgtgaatttttctgatgaggtcacagcgggcttgcgc
atctcagatggggtggtccttttcatcgatgctgctgagggcgtgatgctgaacacagag
cggctgatcaagcacgcagtgcaggagaggctggcagtcaccgtgtgcatcaacaagatt
gaccggctgatcctggagctgaagctaccacccacggatgcttactataagctgcgtcac
attgtcgatgaggtcaatggattaataagcatgtactccacggacgagaacctgatcctt
tccccgctcctgggcaatgtctgcttctccagctcccagtacagcatctgcttcacgctg
ggctcctttgccaagatctatgctgacacctttggtgacattaactaccaggagtttgct
aaaagactctggggtgacatctacttcaaccctaagacgcggaagttcaccaaaaaggcc
ccgaccagcagctcccagaggagttttgtggagtttatcttggagcccctctataaaatc
ctcgcccaggtcgtgggtgatgtggacaccagcctcccgaggaccctggatgagcttggc
atccacctgaccaaggaggagctgaagctgaacatccgccccctgctcaggctggtttgc
aaaaaattctttggcgagttcacaggctttgtggacatgtgtgtgcagcatatcccgtct
ccaaaggtgggcgccaagcctaaaatcgagcacacctataccggtggtatggactccgac
cttggcgaggccatgagtgactgtgaccccgacggtcccctgatgtgccacacaaccaag
atgtacagcacagatgatggagttcagtttcatgcctttggccgagtgctaagtggcacc
atccatgctgggcagcctgtgaaggtactgggggagaactacaccctggaggatgaggaa
gactcccagatatgcaccgtgggccgcctttggatctcagtggccaggtaccacatcgaa
gtgaaccgtgttcctgctggcaactgggtcctgatcgaaggtgtcgatcaaccaattgtg
aagacagcaaccataactgaaccccgaggcaacgaggaggctcagatcttccggcccttg
aagttcaacaccacatctgttatcaagattgctgtggagccagtcaatccctctgagctg
cccaagatgctggacggcctgcgcaaggtcaacaagagctacccgtccctcaccaccaag
gtggaagagtctggcgagcatgtgatcctgggcactggagagctctacctggactgcgtg
atgcacgatttgcggaagatgtactcggagatcgacatcaaggtggctgaccctgttgtc
acgttctgtgagacggtggtggaaacgtcgtccctcaagtgtttcgccgaaactcccaat
aaaaagaacaagatcaccatgattgccgagcctctggagaagggcctcgcagaggacata
gagaacgaggtggtccagatcacatggaacaggaagaagctgggagagttctttcagacc
aagtacgactgggatctgctggctgcccgttccatctgggctttcggcccggatgccacc
ggcccaaacatcctggtggacgataccctgccttcggaggtggacaaggctcttctcggc
tcagtgaaggacagcatcgttcaaggtttccagtggggaaccagggaggggcccctctgt
gatgagttgattcggaatgtcaagtttaagatcctggatgcagtggttgcccaggagccc
ctgcaccggggcgggggccagatcatccccacagcccggagagtcgtctactcagctttc
ctcatggccacccctcgtctgatggagccctactatttcgtcgaggtccaggcccccgcg
gattgtgtctctgctgtctacacggtcctggccaggcgcaggggacacgtgactcaggat
gcacccatcccaggctctcctctgtacaccatcaaagctttcatcccagccatcgactct
ttcggctttgagactgatctgcgaactcacacgcagggccaggccttttccttgtctgtc
ttccaccactggcagattgtacccggtgaccctctggacaagagcattgtcatccgcccc
ttggagccacagccagctccccacctggcccgagaattcatgatcaaaacccgtcgtaga
aagggcctgagtgaggatgtgagcatcagcaagttcttcgatgatcctatgttgctggag
ctcgccaagcaggatgtggtgcttaactacccaatgtga
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