Brachybacterium kimchii: M4486_02590
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Entry
M4486_02590 CDS
T08303
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bki
Brachybacterium kimchii
Pathway
bki03030
DNA replication
bki03410
Base excision repair
bki03420
Nucleotide excision repair
bki03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bki00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
M4486_02590 (ligA)
03410 Base excision repair
M4486_02590 (ligA)
03420 Nucleotide excision repair
M4486_02590 (ligA)
03430 Mismatch repair
M4486_02590 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bki03032
]
M4486_02590 (ligA)
03400 DNA repair and recombination proteins [BR:
bki03400
]
M4486_02590 (ligA)
Enzymes [BR:
bki01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
M4486_02590 (ligA)
DNA replication proteins [BR:
bki03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
M4486_02590 (ligA)
DNA repair and recombination proteins [BR:
bki03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
M4486_02590 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
M4486_02590 (ligA)
MMR (mismatch excision repair)
DNA ligase
M4486_02590 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
M4486_02590 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
RNA_lig_T4_1
Motif
Other DBs
NCBI-ProteinID:
UQN31614
LinkDB
All DBs
Position
577226..579622
Genome browser
AA seq
798 aa
AA seq
DB search
MAELTAQIEQAIEDYYVHDAPTMADAQYDELERELKELEAKNPQLAKADSPTQTVHGDVA
AGFAPVEHLERMLSLDNAFSLEEVDAWAVRAGEGLGSGADVQYLCELKIDGLAIDLVYED
GVLTRGVTRGDGRVGEDVTANVRTIDNVPDRLETDDPPAVLEVRGEVFYPTAAFEELNEQ
RREAGLPEFANPRNTAAGSLRQKDPNVTASRDLAVYVHGIGVHEGVTLASQSEVYEQLKA
WGLPTSPHWRVLDALADVHEFIEHHGEHRHDVEHEIDGIVLKIDSFAQQRRLGSTSRAPR
WAIAFKYPPEEVTTKLLDIQVNVGRTGRVTPFGVMEPVKVAGSTVQMATLHNQFEVERKG
VLIGDTVVLRKAGDVIPEILGPVEALRDGSEHAFEMPKECPACGTPIGPSKEGDKDWRCP
NTKSCPSQVTGRIEHAASRGAFDIESLGEESAIALTDPDKRRAEALAALRGGHVVYLPIR
SAEDAELENFVVLKNGQEVQGADGVPLLRITREDDPLLPALQTPVVTTGANLFDLTAEDL
RDVFVWQPERRDGEVTGDWRVQPTFWSRPTFRHYKRENAWKQQKPSTVLKNTELLADELE
KARSQPLWRVLVALSIRHVGPTAARSLATAYGSMDAIREADLAQLTETDGVGGIIAESVH
EWFAVDWHRELVEAWAASGVRMADDVEEGFVKTLEGLTVVVTGGLEDFTRDGAKEAIISR
GGKASGSVSKKTDFVVVGENAGSKEDKARDLGLTILDEAGFKDLLENGPADDGSSDEEGS
DGADAEDSSDASAADQKK
NT seq
2397 nt
NT seq
+upstream
nt +downstream
nt
attgcggagctgaccgcacagatcgagcaggccatcgaggactactacgtccacgacgcg
cccacgatggccgacgcgcagtacgacgagctcgaacgcgagctcaaggagctcgaggcg
aagaacccgcagctggcgaaggcggactcgcccacccagaccgtgcacggcgacgtcgcg
gcgggcttcgcgcccgtcgagcacctggagcggatgctgagcctggacaacgcgttcagc
ctcgaggaggtcgacgcctgggcggtccgggccggcgagggcctggggtcgggggccgac
gtccagtacctgtgcgagctgaagatcgatgggctcgcgatcgacctggtctacgaggac
ggcgtgctcacgcgaggtgtcacccgtggcgacggccgcgtcggcgaggacgtcacggcg
aacgtgcgcacgatcgacaacgtgcccgatcgtctggagacggacgacccgcctgcggtg
ctcgaggtccggggcgaggtcttctacccgacggccgcgttcgaggagctcaacgagcag
cgccgcgaggcgggtctgccggagttcgcgaacccgaggaacacggcggcgggctctctg
cgccagaaggacccgaacgtgacggcctcgcgcgatctcgccgtctacgtccacgggatc
ggcgtgcacgagggcgtcaccctcgcctcccagtccgaggtgtacgagcagctgaaggcc
tggggcctgcccacctcgccgcactggcgggtgctggacgcgctcgccgacgtgcacgag
ttcatcgagcaccacggcgagcaccgccacgacgtcgagcacgagatcgacgggatcgtg
ctgaagatcgactccttcgcgcagcagcgccggctgggctcgacgtcgcgcgcgccccgg
tgggcgatcgccttcaagtacccgccggaggaggtcaccacgaagctcctggacatccag
gtcaacgtgggacggaccgggcgcgtgacgcccttcggcgtcatggagccggtgaaggtc
gccgggtcgaccgtgcagatggcgacgctgcacaaccagttcgaggtcgagcgcaagggc
gtgctgatcggcgacaccgtggtgctgcgaaaggccggggacgtgatccccgagatcctg
gggccggtcgaggcgctgcgcgacggcagcgagcacgcgttcgagatgcccaaggagtgc
cccgcctgcggcacgcccatcggaccgtcgaaggagggcgacaaggactggcgctgcccg
aacacgaagtcgtgccccagccaggtcacgggccgcatcgagcacgccgcgtcgcgcggc
gcgttcgacatcgagtccctcggcgaggagagcgcgatcgcgctcacggacccggacaag
cggcgggccgaggcgctcgccgctctgcgcggcggccacgtggtctacctgccgatccgc
tcggccgaggacgccgagctcgagaacttcgtggtgctcaagaacgggcaggaggtccag
ggggccgacggcgtgccgctgctgcggatcacgcgcgaggacgacccgctgctgcccgcg
ttgcagacgcccgtggtgacgacgggcgcgaacctcttcgatctcaccgccgaggacctg
cgcgacgtgttcgtgtggcagcccgagcggcgcgacggcgaggtgacgggggactggcgc
gtacagccgacgttctggtcgcggcccacgttccgccactacaagcgcgagaacgcgtgg
aagcagcagaagccctcgaccgtcctgaagaacacggagctgctggccgacgagctcgag
aaggccaggtcccagccgctgtggcgggtgctggtcgccctctccatccggcatgtgggg
ccgacggccgcacgctccctggcgaccgcctacgggtccatggacgcgatccgcgaggcc
gacctggcgcagctcaccgagaccgacggcgtgggcggcatcatcgccgaaagcgtccac
gagtggttcgccgtggactggcaccgcgagctcgtcgaggcatgggctgcctccggggtg
cgcatggccgacgatgtcgaggagggcttcgtgaagaccctcgaagggctcacggtcgtg
gtcaccggcggcctcgaggacttcacgcgcgacggcgccaaggaggcgatcatctcccgg
ggcggcaaggcctccggatcggtctccaagaagacggatttcgtggtggtgggcgagaac
gccggctccaaggaggacaaggcccgcgacctcggcctcaccatcctcgacgaagcgggg
ttcaaggacctgctggagaacggtccggcggacgacggctcgtccgacgaggaagggtcc
gacggcgcggacgccgaggactcctccgacgcctccgcagcagaccagaagaagtga
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