Bifidobacterium animalis subsp. lactis AD011: BLA_1223
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Entry
BLA_1223 CDS
T00819
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bla
Bifidobacterium animalis subsp. lactis AD011
Pathway
bla03030
DNA replication
bla03410
Base excision repair
bla03420
Nucleotide excision repair
bla03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BLA_1223 (ligA)
03410 Base excision repair
BLA_1223 (ligA)
03420 Nucleotide excision repair
BLA_1223 (ligA)
03430 Mismatch repair
BLA_1223 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bla03032
]
BLA_1223 (ligA)
03400 DNA repair and recombination proteins [BR:
bla03400
]
BLA_1223 (ligA)
Enzymes [BR:
bla01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BLA_1223 (ligA)
DNA replication proteins [BR:
bla03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BLA_1223 (ligA)
DNA repair and recombination proteins [BR:
bla03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BLA_1223 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BLA_1223 (ligA)
MMR (mismatch excision repair)
DNA ligase
BLA_1223 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BLA_1223 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
Nlig-Ia
HHH_8
Motif
Other DBs
NCBI-ProteinID:
ACL29511
UniProt:
B8DU32
LinkDB
All DBs
Position
1548737..1551328
Genome browser
AA seq
863 aa
AA seq
DB search
MEDALIADEQLDRYPIGSDPWIDSLRDIDSDAMELDDLDVSKLNVEQAVRLWSRLSAWVE
GDQVAYYVKDAPLSSDAAYDARMNCLKRLESEFPQLDTPQSPTHRVGGTFSNDFTAVRHP
SQMMSLDDVFSFEELRAWYDGVRKDLEWPEDKLLPMTCEVKIDGLALNLIYRNGVLTQGL
TRGDGVTGEDITMNVRTIHSIPTNLDGPEGDIPDMVEIRGEVFMRWDDFHKLNEANEDAG
RPPFANPRNAAAGSLRQKDPRITAQRHLSFYAHGIGELVWGSGKPVDVADEVRNQSDAYT
MYRKWGVPISPHNREVTDFDQILDMIEYYGEHRGDIEHALDGIVVKVDDLALQRRLGSTS
RAPRWAIAYKYPPEEVNTKLLNIVVQVGRTGRVTPVAILNPVYVAGSTVSRTTLHNAYEV
KRKGILIGDTVVVRKAGDVIPELVGPVIAKREGHEQDLREFVMPTRCPSCDTVLRYEKEG
DKDLRCPNSESCPAQLAERVINLAARKAFDIEHLGDQSAVALTNPEDNRPDSVEAYAPGV
REIVVEPGEEPAPYLAPSGLELPPIQEPVLTSEANLFDLEASDLRDVYVWREAQIIEVRR
HVDSHGKERKVRHRLGGSGLWHREPAFWSGVKDAPLKKDANRKTVKDSEGNPEYEVKPDA
VIVGHGRNGRPRIEEPTENTRKMLDEIEKAKHTDLSRVLVALSIRHVGPPTAFTLAKHFK
TLDALADASAEELEQIDGIGAEIADSIATFFEEARMPGNWRGRVLEAWKAAGVGMSTHDE
GLPQTLEGKSVVVTGTLEHFSRESAKEAIERRGGKASGSVSRKTDWVVVGANPGSKATKA
EELGIPIIDEQQFDTLLATGDVQ
NT seq
2592 nt
NT seq
+upstream
nt +downstream
nt
atggaagatgcattgattgcagacgagcagctcgacaggtatccgattggttcggatccg
tggattgactcattgcgtgacatcgacagtgatgcgatggaacttgatgatctcgacgtg
tcgaagctcaatgtagagcaggcggtgcggctgtggtcacgtctgagtgcttgggtggag
ggcgatcaggtggcctattacgtcaaggacgccccgctttcctccgatgcagcgtacgat
gcgcgcatgaattgcctcaaacgactggagtcggagttcccccagcttgacacgcctcag
tcaccgacccatcgggtaggtggcacattctcgaacgacttcacggcggtgcggcacccc
tcccagatgatgagcctcgatgatgtgttctccttcgaggaactgcgtgcctggtacgat
ggcgtgcgcaaggacctcgaatggccggaagacaagctgttgcccatgacctgcgaggtg
aagatagacggtctggctctgaatctcatctaccgcaacggagttctgacgcagggactc
acccgtggtgatggggtcactggcgaagacatcacgatgaatgtgcgcacgatacactcc
atccccaccaatctggatggcccggagggcgatattcccgatatggtggagattcgcggc
gaggtgttcatgcggtgggatgattttcacaagctcaacgaggcgaacgaagatgcgggc
agaccaccgttcgccaatccacgcaatgcggccgcgggatcgctacgccagaaggatccg
cgcatcaccgcgcagcggcatctgagtttctatgcacatggcatcggcgaactggtatgg
gggtcgggcaagccggtggatgtggccgacgaggtgaggaaccagtcggatgcctacacg
atgtaccgcaaatggggggtgccgatttcgccccataaccgcgaggtcaccgacttcgac
cagattctcgacatgatcgaatactacggcgagcaccggggtgacatcgagcatgcgctc
gacggcattgtggtcaaagtggacgacctcgcgttgcaacgcagactgggcagcacctca
cgcgcgccgcgttgggccatcgcctacaaatacccgcccgaggaggtcaacaccaagctc
ctcaatattgtggtgcaggtcgggcgcacgggcagagtcacaccggtggccatactgaac
ccggtgtatgtggccggatccacggtgtcgcgcaccacgctgcacaatgcatacgaggtc
aaacgcaaaggcattctcatcggcgatacggtggtagtgcgcaaggccggcgatgtgatc
cccgaactggtcggcccagtaatcgccaaacgcgaagggcatgaacaggacctacgcgag
ttcgtcatgcctacacgatgcccatcctgtgacaccgtgttgcggtatgagaaggaggga
gacaaggacctgcgatgcccgaattcggaaagctgcccggcccagctcgccgaacgtgtg
atcaatctggcggcccgcaaggcattcgacattgagcatctgggtgaccaaagcgcggtg
gcgctgacgaaccccgaagacaacaggccggactcggtggaagcctacgcccccggcgtg
cgtgagatcgtggtggaaccaggcgaggagccggcaccgtatctggctccgagcgggctg
gaacttccgcccatccaggagcccgtactcaccagtgaagcgaatttgttcgacctcgaa
gcaagcgacctccgggatgtctatgtgtggcgtgaagcgcagatcatcgaagtgcgcagg
cacgtggattcgcatggcaaggagaggaaggtgcgccatcgtctcggcggttccggcctg
tggcatagggagccggctttctggtccggggtcaaggatgccccgctgaagaaggacgcg
aatcgcaagacggtgaaggactccgaaggcaaccccgaatacgaggtcaaaccggatgcc
gtgattgtgggccatggcaggaatgggcggccgcgcatcgaggaacccaccgagaacacc
aggaagatgctcgatgagatcgagaaagccaagcataccgatctgagccgcgtcctcgta
gcgctctccattcgccatgtgggcccaccgaccgcattcacgctggccaagcactttaag
acactcgatgcgctggccgacgccagtgccgaggaactcgaacagatcgacggcataggc
gcggagatcgccgattccattgcgacattcttcgaggaggctcgcatgccgggcaattgg
cgcggccgtgtgctggaggcgtggaaagccgccggtgtgggcatgagcacgcatgacgag
ggtcttcctcagacgttggaaggcaagagcgtggtggtcaccggcacccttgagcatttc
tcccgcgaatcggctaaggaggccatcgaacgccgtggcggcaaggcctccggatcggtg
agcaggaagacggattgggtggtcgtcggagccaatcccggttcgaaggccacgaaggcc
gaggaactgggcatcccgatcatcgacgagcaacagttcgacactttgctcgccaccggc
gacgtgcaatga
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