Bremia lactucae (lettuce downy mildew): 94346942
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Entry
94346942 CDS
T10371
Symbol
CCR75_003174
Name
(RefSeq) hypothetical protein
KO
K12622
U6 snRNA-associated Sm-like protein LSm3
Organism
blac Bremia lactucae (lettuce downy mildew)
Pathway
blac03018
RNA degradation
blac03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
blac00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
94346942 (CCR75_003174)
09123 Folding, sorting and degradation
03018 RNA degradation
94346942 (CCR75_003174)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
blac03019
]
94346942 (CCR75_003174)
03041 Spliceosome [BR:
blac03041
]
94346942 (CCR75_003174)
Messenger RNA biogenesis [BR:
blac03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
94346942 (CCR75_003174)
mRNA degradation factors
5'-3' decay
Lsm complex
94346942 (CCR75_003174)
Spliceosome [BR:
blac03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
94346942 (CCR75_003174)
Complex C
U2 snRNP components
94346942 (CCR75_003174)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
APP1_cat
Motif
Other DBs
NCBI-GeneID:
94346942
NCBI-ProteinID:
XP_067821922
UniProt:
A0A976IIG8
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Position
LG9:291220..291498
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AA seq
92 aa
AA seq
DB search
MASIDEPLDLIKLSVAERIYVKCRGERELRGVLQAYDQHLNMVLSDVEETITVQELDPET
YEELIKQSKRTIEMLFIRGDVVILVAPPLLTA
NT seq
279 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgatcgacgagccgctggacctgattaagctgagcgtggcagagcgtatttat
gtaaaatgccgcggtgagcgcgagctgcgtggcgttctgcaagcttatgaccagcacttg
aacatggtgctaagcgacgtggaagagactataaccgtacaagaacttgatccagagacg
tacgaagagctaatcaagcagtccaagcgcacgattgaaatgttattcattcgcggagac
gttgtcatccttgtagctcctccactgcttactgcctaa
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