Blastococcus sp. PRF04-17: MVA48_21345
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Entry
MVA48_21345 CDS
T08406
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
blap
Blastococcus sp. PRF04-17
Pathway
blap03030
DNA replication
blap03410
Base excision repair
blap03420
Nucleotide excision repair
blap03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
blap00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MVA48_21345 (ligA)
03410 Base excision repair
MVA48_21345 (ligA)
03420 Nucleotide excision repair
MVA48_21345 (ligA)
03430 Mismatch repair
MVA48_21345 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
blap03032
]
MVA48_21345 (ligA)
03400 DNA repair and recombination proteins [BR:
blap03400
]
MVA48_21345 (ligA)
Enzymes [BR:
blap01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MVA48_21345 (ligA)
DNA replication proteins [BR:
blap03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MVA48_21345 (ligA)
DNA repair and recombination proteins [BR:
blap03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MVA48_21345 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MVA48_21345 (ligA)
MMR (mismatch excision repair)
DNA ligase
MVA48_21345 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MVA48_21345 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
Motif
Other DBs
NCBI-ProteinID:
UOY01453
LinkDB
All DBs
Position
4201829..4203967
Genome browser
AA seq
712 aa
AA seq
DB search
MSTDAELDAPAVAAATDREDVTEVPDDARTRHRDLSEELDRYALAYYVRDEPLVSDGQYD
ELMAELKAIEAAHPALVTPDSPSQKVNGGFTATFAPVQHLERMQSLDNAFSGDELSAWAQ
RVEREVGTGSSYLCELKIDGLAVALLYEKGRLVRAATRGDGVTGEDVTANVLTMRDIPHQ
LSGDDVPDRLEVRGEIYFPVAAFADLNAAMVEQGKAPFANPRNAAAGSLRQKDARVTASR
PLRMIVHGLGAHDGWQPERQSQAYGRLRELGLPTSERYEVAGDLEGVWAYIERYREQRHS
VEHEIDGVVVKVDQVALQRRLGSTSRAPRWAIAFKYPPEEATTTLLDIRVNVGRTGRVTP
FAYMEPVKVAGSTVQLATLHNAGEVKRKGVLIGDTVVIRKAGDVIPEVLGPVVAARTGDE
REFVMPSHCPECGTELRPEKEGDADIRCPNARSCPAQLRERVFHVAGRGAFDIENLGYEA
AVALLTSGLLQDEGDLFFLDEERLARAPFFTRKDGALSANGAKLLANLRTRKDVPLWRVL
VALSIRHVGPTAAQALARDFRSLDRIVGASEEELAAADGVGPTIARSIREWFAVDWHREV
VEKWRQAGVRMADAGEQAGPGPLTGVTVVVTGSLRDYSRDQATAAIQERGGKVTGSVSKK
TGFVVVGADPGSKYDKAVQVRAPILDDDGLQVLLDEGPDAAREVATIGDGSA
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
gtgagcactgacgcggagctggacgcgccggcggtcgcggcggcgaccgaccgggaggac
gtcaccgaggtccccgacgacgcgcgcacccggcaccgcgacctgtccgaggagctcgac
cggtacgcgttggcctactacgtccgcgacgagccgctggtcagcgacggccagtacgac
gagctcatggccgagctcaaggccatcgaggccgcgcacccggcactggtcacgcccgac
tccccgagccagaaggtcaacggcggcttcaccgccaccttcgcgccggtccagcacctc
gagcgcatgcagagcctcgacaacgcgttctccggcgacgagttgtcggcgtgggcgcag
cgcgtcgagcgcgaggtcggcaccgggtcgagctacctgtgcgagctgaagatcgacggg
ctggccgtcgcgctgctgtacgagaagggccggctggtccgtgcggccacccgtggcgac
ggcgtcaccggcgaggacgtcaccgccaacgtcctcacgatgcgcgacatcccgcaccag
ctctccggtgacgacgtcccggaccggctcgaggtgcgcggtgagatctacttcccggtg
gccgccttcgccgacctcaacgccgcgatggtcgagcagggcaaggcgcccttcgccaat
ccgcgcaacgccgcagccgggtcgctgcggcagaaggacgcccgggtcacggcctcccgg
ccgctgcgcatgatcgtgcacggcctcggcgcccacgacggctggcagcccgagcgccag
tcgcaggcctacggccggctccgcgaactcggcctgcccaccagcgagcgctacgaggtg
gccggcgacctcgagggcgtgtgggcctacatcgagcgctatcgcgagcagcggcactcg
gtggagcacgagatcgacggcgtcgtcgtcaaggtcgaccaggtcgccctgcagcggcgg
ctcggctcgacctcgcgcgctccccgatgggccatcgcgttcaagtacccaccggaggaa
gcgacgacgacgttgctcgacatcagggtcaacgtcggccgcaccggccgcgtcacgccg
ttcgcctacatggagccggtgaaggtcgccggctccacggtccagctggcgacgctgcac
aacgccggcgaggtcaagcgcaagggcgtcctgatcggcgacacggtggtcatccgcaag
gccggcgacgtgatccccgaggtcctcgggccggtggtggcggcgcggaccggcgacgag
cgcgagttcgtcatgcccagccactgccccgagtgcggcacggagctgcgaccggagaag
gagggcgacgccgacatccggtgcccgaacgcccggtcctgccccgcccagctgcgggag
cgggtcttccacgtcgcgggccggggcgccttcgacatcgagaacctcggctacgaggcc
gccgtcgccctgctgacctccggcctcctccaggacgagggcgacctcttcttcctcgac
gaggagcggctggcacgcgcgccgttcttcacgaggaaggacggcgccctctccgccaac
ggcgcgaagctgctcgccaatctccggacccgcaaggacgtgcccctctggcgggtcctg
gtcgcgctgtcgatccggcacgtcggcccgacggcggcccaggccctcgcccgcgacttc
cggtcgctcgaccggatcgtcggcgcctcggaggaggaactcgcggcggccgacggtgtc
ggtccgacgatcgcccgctcgatccgcgagtggttcgccgtcgactggcaccgcgaggtg
gtggagaagtggcggcaggccggtgtccgcatggccgacgcgggcgagcaagccggcccc
ggtcccctcaccggcgtgaccgtcgtggtcaccggatcgctgcgcgactacagccgcgac
caggcgacggcggccatccaggagcgcggcggcaaggtgaccggttcggtgtcgaagaag
accggcttcgtcgtcgtcggcgccgaccccggcagcaagtacgacaaggccgtgcaggtc
agggcgccgatcctggacgacgacggtctccaggtgctcctggacgaggggcctgacgcc
gcccgcgaggtggccacgatcggcgacggctccgcatga
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