Bifidobacterium longum subsp. longum BBMN68: BBMN68_93
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Entry
BBMN68_93 CDS
T01345
Symbol
lig
Name
(GenBank) Lig
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
blb
Bifidobacterium longum subsp. longum BBMN68
Pathway
blb03030
DNA replication
blb03410
Base excision repair
blb03420
Nucleotide excision repair
blb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
blb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BBMN68_93 (lig)
03410 Base excision repair
BBMN68_93 (lig)
03420 Nucleotide excision repair
BBMN68_93 (lig)
03430 Mismatch repair
BBMN68_93 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
blb03032
]
BBMN68_93 (lig)
03400 DNA repair and recombination proteins [BR:
blb03400
]
BBMN68_93 (lig)
Enzymes [BR:
blb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BBMN68_93 (lig)
DNA replication proteins [BR:
blb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BBMN68_93 (lig)
DNA repair and recombination proteins [BR:
blb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BBMN68_93 (lig)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BBMN68_93 (lig)
MMR (mismatch excision repair)
DNA ligase
BBMN68_93 (lig)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BBMN68_93 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
HHH
PTCB-BRCT
Nlig-Ia
BRCT_2
Seipin
Zn_Ribbon_1
Motif
Other DBs
NCBI-ProteinID:
ADQ01912
LinkDB
All DBs
Position
111136..113898
Genome browser
AA seq
920 aa
AA seq
DB search
MSTNEQLAWDFDDGDVAEVRPDTGIARFAPGSEQWIAALQPTDDDAIRLDRFDVNTMTAE
AAARLWARVAAWVESDQIAYYIDDSPVSSDAAYDARMRCLERLEAAFPSLDNPQSPTHRV
GGSFSNDFASVRHPSRMMSLDDVFSIEELKDWYDSVIRDLDWPESKPLPMSCEVKIDGLA
LNLIYRNGVLEQGLTRGDGVTGEDITLNVRTIGSIPANLGGPKEDVPDFVEIRGEVFMRW
DDFHTLNNEQEDAGRAPFANPRNAAAGSLRQKDPRITATRRLSFYAHGLGQLTWGPDHPR
GTHDVVADQSQAYDLYTKWGVPVSPHNRAVTSFQEILDMIEYYGEHRGDIEHALDGIVVK
VDDLGLQRTLGATSRAPRWAIAYKYPPEEVNTELLNITVQVGRTGRVTPVAVLKPVYVAG
STVARTTLHNGFEVKRKGILIGDTVVVRKAGDVIPELVGPVLERRKGREDQLREFVMPEF
CPSCGAKLSPAKEGDKDIRCPNVESCPAQLTERVISLASRKAFDIEHLGEQSAIALTNPE
ENRPDSVATYAPNITEVLVAPGEEPDPYEPVEGLELPAAQKPVLSNESGLFNLTAADLRD
VRVWREAAIVEVHETVGANGKKKKVRKRVGGSGLWHQVPAFWTAPTPAKKLTAKQLAERA
QGETAIESAETQGGTASETTGAPTGAEAPLGTMPGFAAASYPEYDVPADAVIVRVDHKTT
RTGVTDVPVIIRPGENTRKMFDEMDKARHADLWRVLVALSIRRLGPPTARLIASAMGSLA
AIENATIEDLTAIDGVGPEIAESVVNWFAATREPGDWRGATLRAWQAAGVGVDEAETSSL
PQTLAGKTVVVTGSLEGYSRDSAKEAIIERGGKAAGSVSKKTDYVVIGANAGSKAAKAEE
LGIPMLSETQFAQLLATGTI
NT seq
2763 nt
NT seq
+upstream
nt +downstream
nt
atgagcacgaacgaacaactggcatgggatttcgacgatggggatgtggccgaggtccgg
cctgataccggtattgcacgttttgcccctggctccgaacaatggatagccgcactgcag
cccactgacgacgacgcgatacgcctcgaccgtttcgacgtgaacacgatgaccgctgag
gccgccgcccgcctgtgggctcgcgtggccgcatgggtggaatccgatcagatcgcctac
tacatcgacgactcacccgtcagctccgacgccgcctacgacgcgcgcatgcgttgcctc
gaacgactcgaagcggcgttcccctcactggacaatccgcagtcgcccacccatcgcgtc
ggcggttccttctccaacgacttcgcctccgtgcgccaccccagccgcatgatgagcctt
gacgacgtcttctccatcgaagaactcaaggattggtacgactcggtgattcgcgacctc
gattggcccgaatccaagcccctgcccatgagctgcgaggtcaaaatcgacggcctcgcc
ctgaacctcatctatcgcaacggcgtgcttgaacagggcctgacgcgcggcgatggcgtt
accggcgaagacatcaccctgaatgtgcgaaccatcggctccattcccgcaaacctcggc
ggccccaaggaagacgttccggacttcgtggaaatccgaggcgaagtgttcatgcgttgg
gatgatttccacaccctgaacaacgagcaggaggacgccggacgagcgcccttcgccaac
ccacgcaacgcggctgccggctcgctgcgtcaaaaagaccctcgcatcaccgccacccgt
cgcctgagcttctatgcgcatggtctggggcagctcacttgggggccggaccatccgcgc
ggcacccatgacgtggtcgccgaccagtcgcaggcctacgatctatacaccaagtggggc
gtgccggtctccccgcacaatcgtgcggtgacctcattccaggagatcctggacatgatc
gagtactacggcgagcatcgtggcgacatcgagcatgcacttgacggcatcgtcgtcaag
gtcgatgacctgggcctgcagcgtaccctcggcgccacttcgcgcgcgccgcgctgggcc
atcgcctacaaatacccgcccgaagaggtcaacaccgaactgctcaacatcaccgtgcag
gtggggcgtaccggccgtgtgacgccggtcgccgtgctcaaacctgtctacgtggccggc
tccaccgtggctcgtaccacgctgcacaatggatttgaagtcaaacgcaagggcattctg
atcggcgacaccgtggtggtgcgcaaggccggcgatgtgattcccgaactggtcggcccg
gtgcttgaacggcgcaaagggcgtgaggaccagctgcgcgaattcgtcatgcccgagttc
tgcccttcatgcggcgcgaaactgtcacccgccaaggagggggacaaggacattcgctgc
ccgaatgtggagagctgcccggcccagttgaccgagcgcgtgatttcgctggcctcacgc
aaggcgttcgacatcgagcacttgggcgaacaatcggccatcgctctgaccaacccggag
gagaaccggcctgattcggtggcgacctacgcgccgaacatcaccgaggttctggtcgcc
cccggcgaagagcctgacccgtacgagccggtggaagggctggaattgccggccgcgcag
aagccggtgttgtccaacgaatccgggttgttcaacctgaccgccgccgatctgcgcgac
gtgcgcgtgtggcgtgaggccgcaatcgtcgaggtgcatgagacggtcggtgcgaacggt
aagaagaaaaaggtgcgtaagcgtgtcggcggctctggcctgtggcatcaggtgcctgct
ttctggaccgcgcccacgccggccaaaaagctcacggccaagcagctggccgaacgcgcg
caaggggagaccgcaatcgaatctgccgaaacacagggaggtaccgccagcgagacgacc
ggcgcacctaccggggctgaggcgccacttggtactatgccgggctttgccgcagcctcc
tatcctgagtatgacgtgccggccgacgcggttatcgtgcgcgtggatcacaagaccacg
cgcactggcgtcacggatgtaccggtgatcattcggcccggcgaaaacacgcgcaagatg
ttcgacgaaatggacaaggcccgtcacgccgacctgtggcgtgtgctggtcgcgttgtcg
attcgccggctcggtccgcctaccgcacgcctgattgcctcggcgatgggctcgctggca
gccatcgaaaacgccacgattgaagatctgacggccatcgacggggtgggcccggaaatc
gccgaatcggtggtgaactggttcgccgccacccgcgaacccggcgactggcgcggcgcg
actttgcgtgcttggcaggccgccggcgtgggcgtcgacgaggccgagaccagttcgttg
ccgcagacgctggccggcaaaaccgtggtggtcaccggttcattggagggctattcgcgt
gattccgccaaagaggcgattatcgagcgcggcggcaaggcggccggttcggtgagcaag
aagaccgattacgtggtgattggcgcaaacgccggctccaaggccgccaaggccgaggaa
ctcggcatccccatgctgagcgaaacccaattcgcccagctcctagccaccggcaccatc
taa
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