Bacillus licheniformis DSM 13 = ATCC 14580: BLi00716
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Entry
BLi00716 CDS
T00200
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bld
Bacillus licheniformis DSM 13 = ATCC 14580
Pathway
bld03030
DNA replication
bld03410
Base excision repair
bld03420
Nucleotide excision repair
bld03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bld00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BLi00716 (ligA)
03410 Base excision repair
BLi00716 (ligA)
03420 Nucleotide excision repair
BLi00716 (ligA)
03430 Mismatch repair
BLi00716 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bld03032
]
BLi00716 (ligA)
03400 DNA repair and recombination proteins [BR:
bld03400
]
BLi00716 (ligA)
Enzymes [BR:
bld01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BLi00716 (ligA)
DNA replication proteins [BR:
bld03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BLi00716 (ligA)
DNA repair and recombination proteins [BR:
bld03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BLi00716 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BLi00716 (ligA)
MMR (mismatch excision repair)
DNA ligase
BLi00716 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BLi00716 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
RNA_pol_A_CTD
BRCT_2
Zn_ribbon_NUD
HHH_3
zf-tcix
zf-IS66
Motif
Other DBs
NCBI-ProteinID:
AAU39652
UniProt:
Q65MR2
LinkDB
All DBs
Position
720206..722209
Genome browser
AA seq
667 aa
AA seq
DB search
MEKEAAKRRVEQLHALINKYNYEYHTLDDPSVPDSEYDKLMKELIALEEEHPDLKTPDSP
SQRVGGAVLDAFQKVQHKTPMLSLGNAFNEEDLRDFDRRVRQAVGDVEYNVEFKIDGLAV
SLRYENGVFVRGATRGDGTTGEDITENLKTIRNIPLRMKRDLSIEVRGEAFMPKRSFELL
NKARIERDEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYSIAELDEMGVETQSQGLDF
LDELGFKTNHERKKCSTIEEVIEIVEELKTKRADLPYEIDGIVIKVDSLDQQEELGFTAK
SPRWAIAYKFPAEEVVTTLLDIELSVGRTGAVTPTAILEPVKVAGTTVQRASLHNEDLIK
EKDIRLLDKVVVKKAGDIIPEVVNVLVEQRTGKEKEFNMPKECPECGSELVRIEGEVALR
CINPECPAQIREGLIHFVSRNAMNIDGLGERVITQLFREDLVHNVADLYKLTREQLINLE
RMGEKSTDNLLNSIEKSKKNSLERLLFGLGIRFIGAKAAKTLAMHFETLDKLKKATKEEL
IEVDEIGDKMADALVTYFEKEEILKLLDELEELGVNTVYKGPKKAAAEASDSYFAGKTIV
LTGKLSEMSRNDAKAEIEALGGKITGSVSKKTDLVIAGEAAGSKLAKAEDLNIEVWDEAR
LISELKK
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaagaagcagctaaacgccgtgtggaacaactgcatgcattgattaacaaatac
aactacgaatatcacacccttgacgatccaagcgtgcctgattccgaatatgacaagctg
atgaaagagctgattgctcttgaagaagagcatcccgacctgaaaacgccggactctcct
tctcagcgcgtcggcggagccgttttggacgcctttcaaaaagtgcagcacaaaacgccg
atgctgagcctcggcaacgcgtttaatgaagaagatctgcgcgactttgaccgccgcgtc
cgccaggcggtcggagacgttgaatacaacgtcgagtttaaaatagacggtcttgctgtt
tcactgcgctatgaaaacggcgtatttgtcagaggtgcgacgagaggcgacggtacgacg
ggcgaggatattacggaaaatttgaaaaccatcagaaacattcccctcagaatgaaacgc
gatctttctattgaagtgcgcggcgaagcttttatgccgaagcgctcctttgaactgctg
aacaaagcgcggatcgaacgtgatgaagagccgttcgccaacccgcggaacgccgctgcc
ggttcattaaggcagctcgatccgaaaattgccgcgaaacgaaatctcgatatcttcgtc
tacagtatagcggagcttgatgaaatgggcgttgaaacgcaaagccagggactcgatttc
ctcgacgaactcggcttcaaaaccaatcatgaaagaaaaaaatgcagcacgatcgaagaa
gtcattgagattgtcgaagagctcaagacaaaacgcgccgacctcccgtatgaaatcgac
gggatcgtcattaaagtcgattcccttgaccagcaggaagagctcggctttacggcgaaa
agcccgcgctgggcgatcgcctacaagtttcctgccgaagaggttgttacgacgcttttg
gacattgaattaagcgtcggccggacgggcgcagtgaccccgactgcgattctcgaacct
gtaaaagtggcgggaacgaccgtccaaagagcttctctccacaacgaagatttaattaaa
gagaaggatatcagactgctggacaaagtcgtcgtcaaaaaggcgggagacatcattccg
gaggtcgtcaacgtcctcgtcgaacagcggacgggcaaagaaaaagaattcaacatgccg
aaggaatgcccggaatgcggaagcgagcttgtcagaatcgaaggagaagtcgcgcttcgc
tgcattaatccggaatgtccggctcagatcagggaaggcctgatccattttgtttcccgg
aatgcgatgaatatagatggtctcggcgagcgcgtcatcacccagctgttccgcgaagac
ctcgtccataatgtcgccgatctgtataagctgacgcgcgagcagctgatcaatctcgag
cggatgggggaaaagtcgaccgacaacttattgaattcgattgaaaaatcgaagaagaac
tcattggaacggcttctcttcggactcggcatccgcttcatcggcgccaaagcggccaag
acgctggcgatgcattttgaaacgctcgataagcttaaaaaagcgacaaaagaagaattg
atcgaagtcgatgaaatcggcgacaagatggcggacgccctcgtcacctattttgaaaaa
gaagagattctgaagctgttggacgagcttgaagaactcggggtcaacaccgtgtataaa
ggcccgaaaaaagcggccgctgaagcgagcgattcgtattttgcggggaaaacgatcgtc
ctgaccgggaagctcagcgagatgtcgcggaatgacgcgaaagcggaaatcgaagcgctc
ggcggaaaaatcacaggcagtgtaagcaaaaaaaccgatctcgtcattgccggcgaagcg
gcaggcagcaaactggcgaaagctgaagacctaaacatcgaagtatgggatgaggcaaga
ctgatcagtgagctaaagaaataa
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integrated database retrieval system
