Bifidobacterium longum subsp. longum F8: BIL_01100
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Entry
BIL_01100 CDS
T02580
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
blg
Bifidobacterium longum subsp. longum F8
Pathway
blg03030
DNA replication
blg03410
Base excision repair
blg03420
Nucleotide excision repair
blg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
blg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BIL_01100
03410 Base excision repair
BIL_01100
03420 Nucleotide excision repair
BIL_01100
03430 Mismatch repair
BIL_01100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
blg03032
]
BIL_01100
03400 DNA repair and recombination proteins [BR:
blg03400
]
BIL_01100
Enzymes [BR:
blg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BIL_01100
DNA replication proteins [BR:
blg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BIL_01100
DNA repair and recombination proteins [BR:
blg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BIL_01100
NER (nucleotide excision repair)
GGR (global genome repair) factors
BIL_01100
MMR (mismatch excision repair)
DNA ligase
BIL_01100
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BIL_01100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
HHH
PTCB-BRCT
Nlig-Ia
BRCT_2
Seipin
Zn_Ribbon_1
Motif
Other DBs
NCBI-ProteinID:
CBK69805
LinkDB
All DBs
Position
complement(113012..115774)
Genome browser
AA seq
920 aa
AA seq
DB search
MSTNEQLAWDFDDGDVAEVRPDTGIARFAPGSEQWIAALQPTDDDAIRLDRFDVNTMTAE
AAARLWARVAAWVESDQIAYYIDDSPVSSDAAYDARMRCLERLEAAFPSLDNPQSPTHRV
GGSFSNDFASVRHPSRMMSLDDVFSIEELKDWYDSVIRDLDWPESKPLPMSCEVKIDGLA
LNLIYRNGVLEQGLTRGDGVTGEDITLNVRTIGSIPANLGGPKEDVPDFVEIRGEVFMRW
DDFHTLNNEQEDAGRAPFANPRNAAAGSLRQKDPRITATRRLSFYAHGLGQLTWGPDHPR
GTHDVVADQSQAYDLYTKWGVPVSPHNRAVTSFQEILDMIEYYGEHRGDIEHALDGIVVK
VDDLGLQRTLGATSRAPRWAIAYKYPPEEVNTELLNITVQVGRTGRVTPVAVLKPVYVAG
STVARTTLHNGFEVKRKGILIGDTVVVRKAGDVIPELVGPVLERRKGREDQLREFVMPEF
CPSCGAKLSPAKEGDKDIRCPNVESCPAQLTERVISLASRKAFDIEHLGEQSAIALTNPE
ENRPDSVATYAPNITEVLVAPGEEPDPYEPVEGLELPAAQKPVLSNESGLFNLTAADLRD
VRVWREAAIVEVHETVGANGKKKKVRKRVGGSGLWHQVPAFWTAPTPAKKLTAKQLAERA
QGEAAIESAETQGGTASETTGAPTGAEAPLGTMPGFAAASYPEYDVPADAVIVRVDHKTT
RTGVTDVPVIIRPGENTRKMFDEMDKARHADLWRVLVALSIRRLGPPTARLIASAMGSLA
AIENATIEDLTAIDGVGPEIAESVVNWFAATREPGDWRGATLRAWQAAGVGVDEAETSSL
PQTLAGKTVVVTGSLEGYSRDSAKEAIIERGGKAAGSVSKKTDYVVIGANAGSKAAKAEE
LGIPMLSETQFAQLLATGTI
NT seq
2763 nt
NT seq
+upstream
nt +downstream
nt
atgagcacgaacgaacaactggcatgggatttcgacgatggggatgtggccgaggtccgg
cctgataccggtattgcacgttttgcccctggctccgaacaatggatagccgcactgcag
cccactgacgacgacgcgatacgcctcgaccgtttcgacgtgaacacgatgaccgctgag
gccgccgcccgcctgtgggctcgcgtggccgcatgggtggaatccgatcagatcgcctac
tacatcgacgactcacccgtcagctccgacgccgcctacgacgcgcgcatgcgttgcctc
gaacgactcgaagcggcgttcccctcactggacaatccgcagtcgcccacccatcgcgtc
ggcggctccttctccaacgacttcgcctccgtgcgccaccccagccgcatgatgagcctt
gacgacgtcttctccatcgaagaactcaaggattggtacgactcggtgattcgcgacctc
gattggcctgaatccaagcccctgcccatgagttgcgaggtcaaaatcgacggcctcgcc
ctgaacctcatctatcgcaacggcgtgcttgaacagggactgacgcgcggcgacggcgtt
acaggcgaagacatcaccctgaatgtgcgaaccatcggctccattcccgcaaacctcggc
ggccccaaggaagacgttccggacttcgtggaaatccgaggcgaagtgttcatgcgttgg
gatgatttccacaccctgaacaacgagcaggaggacgccggacgagcgcccttcgccaac
ccacgcaacgccgccgccggctcgctgcgtcaaaaagaccctcgcatcaccgccacccgt
cgcctgagcttctatgcgcatggtctggggcagctcacttgggggccggaccatccgcgc
ggcacccatgatgtggtcgccgaccagtcgcaggcctacgatctatacaccaagtggggc
gtgccggtctccccgcacaatcgtgcggtgacctcattccaggagatcctggacatgatc
gagtactacggcgagcatcgtggcgacatcgagcatgcacttgacggcatcgtcgtcaag
gtcgatgacctgggcctgcagcgtaccctcggcgccacttcgcgcgcgccgcgctgggcc
atcgcctacaaatacccgcccgaagaggtcaacaccgaactgctcaacatcaccgtgcag
gtggggcgtactggccgcgtgacgccggtcgccgtgctcaaacctgtctacgtggccggc
tccaccgtggctcgtaccacgctgcacaatggatttgaagtcaaacgcaagggcattctg
atcggcgacaccgtggtggtgcgcaaggccggcgatgtgattcccgaactggtcggcccg
gtgcttgaacggcgcaaagggcgtgaggaccagctgcgcgaattcgtcatgcccgagttc
tgcccttcatgcggcgcgaaactgtcacccgccaaggagggggacaaggacattcgctgc
ccgaatgtggagagctgcccggcccagttgaccgagcgcgtgatttcgctggcctcacgc
aaggcgttcgacatcgagcacttgggcgaacaatcggccatcgctctgaccaacccggag
gagaaccggcctgattcggtggcgacctacgcgccgaacatcaccgaggttctggtcgcc
cccggcgaagagcctgacccgtacgagccggtggaagggctggaattgccggccgcgcag
aagccggtgttgtccaacgaatccgggttgttcaacctgaccgccgccgatctgcgcgac
gtgcgcgtgtggcgtgaggccgcaatcgtcgaggtgcatgagacggtcggtgcgaacggt
aagaagaaaaaggtgcgtaagcgtgtcggcggctctggcctgtggcatcaggtgcctgct
ttctggaccgcgcccacgccggccaaaaagctcacggccaagcagctggccgaacgcgcg
caaggggaggccgcaatcgaatctgccgaaacacagggaggtaccgccagcgagacgacc
ggcgcacctaccggggctgaggcgccacttggtactatgccgggctttgccgcagcctcc
tatcctgagtatgacgtgccggccgacgcggttatcgtgcgcgtggatcacaagaccacg
cgcactggcgtcacggatgtaccggtgatcattcggcccggcgaaaacacgcgcaagatg
ttcgacgaaatggacaaggcccgtcacgccgacctgtggcgtgtgctggtcgcgttgtcg
attcgccggctcggtccgcctaccgcacgcctgattgcctcggcgatgggctcgctggca
gccatcgaaaacgccacgattgaagatctgacggccatcgacggggtgggcccggaaatc
gccgaatcggtggtgaactggttcgccgccacccgcgaacccggcgactggcgcggcgcg
actttgcgtgcttggcaggccgccggcgtgggcgtcgacgaggccgagaccagttcgttg
ccgcagacgctggccggcaaaaccgtggtggtcaccggttcattggagggctattcgcgt
gattccgccaaagaggcgattatcgagcgcggcggcaaggcggccggttcggtgagcaag
aagaccgattacgtggtgattggcgcaaacgccggctccaaggccgccaaggccgaggaa
ctcggcatccccatgctgagcgaaacccaattcgcccagctcctagccaccggcaccatc
taa
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