Bifidobacterium longum subsp. longum JDM301: BLJ_1424
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Entry
BLJ_1424 CDS
T01240
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bll
Bifidobacterium longum subsp. longum JDM301
Pathway
bll03030
DNA replication
bll03410
Base excision repair
bll03420
Nucleotide excision repair
bll03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bll00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BLJ_1424
03410 Base excision repair
BLJ_1424
03420 Nucleotide excision repair
BLJ_1424
03430 Mismatch repair
BLJ_1424
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bll03032
]
BLJ_1424
03400 DNA repair and recombination proteins [BR:
bll03400
]
BLJ_1424
Enzymes [BR:
bll01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BLJ_1424
DNA replication proteins [BR:
bll03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BLJ_1424
DNA repair and recombination proteins [BR:
bll03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BLJ_1424
NER (nucleotide excision repair)
GGR (global genome repair) factors
BLJ_1424
MMR (mismatch excision repair)
DNA ligase
BLJ_1424
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BLJ_1424
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
HHH
PTCB-BRCT
Nlig-Ia
BRCT_2
Seipin
Zn_Ribbon_1
Motif
Other DBs
NCBI-ProteinID:
ADH00868
UniProt:
D6ZVG2
LinkDB
All DBs
Position
complement(1681262..1684024)
Genome browser
AA seq
920 aa
AA seq
DB search
MSTNEQLAWDFDDGDVAEVRPDTGIARFAPGSEQWIAALQPTDDDAIRLDRFDVNTMTAE
AAARLWARVAAWVESDQIAYYIDDSPVSSDAAYDARMRCLERLEAAFPSLDNPQSPTHRV
GGSFSNDFTSVRHPSRMMSLDDVFSIEELKDWYDSVIRDLDWPESKPLPMSCEVKIDGLA
LNLIYRNGVLEQGLTRGDGVTGEDITLNVRTIGSIPANLGGPKEDVPDFVEIRGEVFMRW
DDFHTLNNEQEDAGRAPFANPRNAAAGSLRQKDPRITATRRLSFYAHGLGQLTWGPDHPR
GTHDVVADQSQAYDLYTRWGVPVSPHNRAVTSFQEILDMIEYYGEHRGDIEHALDGIVVK
VDDLGLQRALGATSRAPRWAIAYKYPPEEVNTELLNITVQVGRTGRVTPVAVLKPVYVAG
STVARTTLHNGFEVKRKGILIGDTVVVRKAGDVIPELVGPVLERRKGREGQLREFVMPEF
CPSCGAKLAPAKEGDKDIRCPNVESCPAQLTERVISLASRKAFDIEHLGEQSAIALTNPE
ENRPDSVATYAPNITEVLVAPGEEPEPYEPVEGLELPAAQKPVLSNESGLFDLTSADLRD
VRVWREAAIVEVHETVDANGKKKKVRKRVGGSGLWHQVPAFWTAPTPAKKLTAKQLAERA
QEEAAVESAGTQGGAASETTGAPTGAEAPLGTMPGFAAASYPEYDVPADAVIVRVDHKTT
RTGVTDVPVIIRPGENTRKMFDEMDKARHADLWRVLVALSIRRLGPPTARLIASAMGSLA
AIENATIEDLTAIDGVGPEIAESVVNWFAAAREPGDWRGATLRAWQAAGVGVDEAETSSL
PQTLAGKTVVVTGSLEGYSRDSAKEAIIERGGKAAGSVSKKTDYVVIGANAGSKATKAEE
LGIPMLGEAQFAQLLATGTI
NT seq
2763 nt
NT seq
+upstream
nt +downstream
nt
atgagcacgaacgaacaactggcatgggatttcgacgatggggatgtggccgaggtccgg
cctgataccggtattgcacgttttgcccctggctccgaacaatggatagccgcactgcag
cccactgacgacgacgcgatacgcctcgaccgtttcgacgtgaacacgatgaccgctgag
gccgccgcccgcctgtgggctcgcgtggccgcatgggtggaatccgatcagatcgcctac
tacatcgacgactcacccgtcagctccgacgccgcctacgacgcgcgcatgcgttgcctc
gaacgactcgaagcggcgttcccctcattggacaatccgcagtcgcccacccatcgcgtc
ggcggctccttctccaacgacttcacctccgtgcgccaccccagccgcatgatgagcctt
gacgacgtcttctccatcgaagaactcaaggattggtacgactcggtgattcgcgacctc
gattggcccgaatccaagcccctgcccatgagctgcgaggtcaaaatcgacggcctcgcc
ctgaacctcatctatcgcaacggcgtgcttgaacagggcctgacgcgcggcgacggcgtt
accggcgaagacatcaccctgaatgtgcgaaccatcggctccattcccgccaacctcggc
ggccccaaggaagacgttccggacttcgtggaaatccgaggcgaagtgttcatgcgctgg
gatgacttccacaccctgaacaacgagcaggaggacgccggacgagcgccctttgccaac
ccgcgcaacgccgccgccggctcgctgcgtcaaaaagaccctcgcatcaccgccacccgt
cgcctgagcttctatgcgcatggtctgggtcagctcacctgggggccggaccatccgcgc
ggcacccatgacgtggtcgccgaccagtcgcaggcctacgatctatacaccaggtggggc
gtgccggtctccccgcataatcgtgcggtgacctcattccaggagatcctggacatgatc
gagtactacggcgagcatcgcggcgacatcgagcacgcgctcgacggcattgtcgtcaag
gtcgatgacctgggcctgcagcgcgccctcggtgccacctcgcgcgcgccgcgctgggcc
atcgcctacaaatacccgcccgaagaggtcaacaccgaactgctcaacatcaccgtgcag
gtggggcgtaccggccgtgtgacgccggtcgccgtgctcaaacctgtctacgtggccggc
tccaccgtggctcgtaccacgctgcacaacggatttgaagtcaaacgcaagggcatcctg
atcggcgacaccgtggtggtgcgcaaggccggcgatgtgattcccgaactggtcggcccg
gtgcttgaacggcgcaaagggcgtgagggccagctgcgcgaattcgtcatgcccgagttc
tgcccttcatgcggcgcgaaactggcacccgccaaggagggtgacaaggacatccgctgc
ccgaatgtggaaagctgcccggcccagttgaccgagcgcgtgatttcgctggcctcacgc
aaggcgttcgacatcgagcatctgggtgaacagtcggccatcgctctgaccaacccggag
gagaaccggcctgattcggtggcgacctacgcgccgaacatcactgaggttctggtcgcc
cccggcgaagagcccgaaccgtacgagccggtggaggggctggaattgccggccgcgcag
aagccggtgttgtctaacgaatccgggttgttcgacctgacctccgccgatctgcgcgac
gtgcgtgtgtggcgtgaggccgcaatcgtcgaagtgcatgagacggtcgatgcgaacggt
aagaagaaaaaggtgcgtaagcgtgtcggcggctctggcctgtggcatcaggtgcctgcc
ttctggaccgcgcccacgccggccaagaagcttacggccaagcagttggccgaacgcgcg
caagaagaggccgcagtcgaatctgccggaacacagggaggtgccgccagcgagacgacc
ggcgcacctaccggggctgaggctccacttggtactatgccgggctttgccgcagcctcc
tatcccgagtatgacgtgccggccgacgcggtcatcgtgcgcgtggaccacaagaccacg
cgcaccggcgtcacggatgtgccggtgatcattcggcccggcgaaaacacgcgcaagatg
ttcgacgaaatggacaaggcccgtcacgccgacctgtggcgtgtgctggtcgcgttgtcg
attcgccggctcggtccgcctaccgcacgcctgatcgcctcggcgatgggctcgctggca
gccatcgaaaacgccacgattgaagatctgacggccatcgacggggtgggcccggaaatc
gccgaatcggtggtgaactggttcgccgccgcccgcgagcccggcgactggcgcggcgcg
actttgcgtgcttggcaggccgccggcgtgggcgtcgacgaggccgagaccagttcgctg
ccgcagacgctggccggcaaaaccgtggtggtcaccggttctctggagggctattcgcgc
gactccgccaaagaggcgattatcgagcgcggcggcaaggcggccggttcggtgagcaag
aagaccgattacgtggtgatcggcgcaaacgccggctccaaggccaccaaggctgaggaa
ctcggcatccccatgctgggcgaagcccaattcgcccagctcctagccaccggcaccatc
taa
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